Note that R 2.8.0 and Bioconductor 2.3 postdate the messages you quote.
On Thu, 6 Nov 2008, Steven McKinney wrote:
-----Original Message-----
From: Steve Lianoglou [mailto:[EMAIL PROTECTED]
Sent: Thu 11/6/2008 1:29 PM
To: Steven McKinney
Cc: R-SIG-Mac@stat.math.ethz.ch
Subject: Re: [R-SIG-Mac] 64 bit R tcltk library problem: Symbol not found:
_Tk_Init
Hi,
...
In trying to be a little helpful, though ...
Initially I installed several Bioconductor packages,
using biocLite() e.g.
biocLite("beadarray", type = "source")
You don't actually need to install bioconductor packages from source
-- they're already compiled as a 4-way fat binary for Leopard as of
bioconductor 2.3 ... while it doesn't help you much here, perhaps it's
good to know to save you install/compile time in the future.
-steve
--
Steve Lianoglou
Graduate Student: Physiology, Biophysics and Systems Biology
Weill Medical College of Cornell University
http://cbio.mskcc.org/~lianos
"> You don't actually need to install bioconductor packages from source "
Can Simon Urbanek weigh in on this?
I've been keeping an eye on R-SIG-Mac and have been seeing
repeated references in the last few weeks about
installing from source for 64-bit R.
e.g.:
Re: [R-SIG-Mac] /bin/sh: tar: command not found
Kasper Daniel Hansen Sent: Fri 10/3/2008 2:43 PM
If you are doing 64bit computing you need
to install from source.
Re: [R-SIG-Mac] 64 bit Mac GUI
Simon Urbanek Sent: Sun 9/28/2008 12:36 PM
PS: When you are using the Package Installer, make sure you select
"CRAN (sources)"!
You don't need extra library paths for 64-bit packages, but you want
to use type='source' in install.packages for 64-bit (as the site
says).
Cheers,
Simon
Any guidance appreciated.
Steven McKinney
Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre
email: smckinney +at+ bccrc +dot+ ca
tel: 604-675-8000 x7561
BCCRC
Molecular Oncology
675 West 10th Ave, Floor 4
Vancouver B.C.
V5Z 1L3
Canada
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--
Brian D. Ripley, [EMAIL PROTECTED]
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
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