Mac OS 10.5.5 and R.app 2.9.0

I start up, run a few things, and quit (w or wo save) and no directory
changes

Then I restart and the recent commands are no longer in Rhistory

The only box I have checked in History preferences is Read on Startup and I
have max entries set to 5000

I see queries about this before but I could find no solution

Thank you

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