On Jul 13, 2010, at 8:13 AM, Ken Knoblauch wrote: > Thanks. I'm in mode d'attente... >
I did not see the exact OS version mentioned anywhere but as Romain pointed out it's working just fine on OS X 10.5.8 with gcc 5577: hagal:~$ gcc --version i686-apple-darwin9-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5577) Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. hagal:~$ uname -r 9.8.0 [...] * installing *source* package 'Rcpp' ... ** libs *** arch - i386 g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c Date.cpp -o Date.o g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c DateVector.cpp -o DateVector.o g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c Datetime.cpp -o Datetime.o [...] So my only advice really is to re-install Xcode... Cheers, Simon > > Quoting Romain Francois <romain.franc...@dbmail.com>: > >> >> Le 13/07/10 13:59, Ken Knoblauch a écrit : >>> Salut Romain, >>> >>> Thanks for your rapid response. Toujours pas de chance. >>> >>> Just for verification, my gcc >>> >>> [Macintosh-83:~] knoblauch% gcc --version >>> i686-apple-darwin9-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5577) >>> Copyright (C) 2007 Free Software Foundation, Inc. >>> This is free software; see the source for copying conditions. There is NO >>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. >> >> IIRC, this is the version (both OS and compiler version) that is used >> on CRAN so there is nothing fundamentally wrong about these. >> >> I'm cc'ing the r-sig-mac mailing list where people might have more >> clues, as I am afraid I'm short :-( >> >> Romain >> >>> [Macintosh-83:~] knoblauch% svn checkout >>> svn://svn.r-forge.r-project.org/svnroot/rcpp/pkg >>> A pkg/RcppExamples >>> ... >>> >>> [Macintosh-83:~] knoblauch% cd pkg >>> [Macintosh-83:~/pkg] knoblauch% R CMD INSTALL -l >>> ~/Library/R/2.11/library/ Rcpp >>> * installing *source* package ‘Rcpp’ ... >>> ** libs >>> *** arch - i386 >>> g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include >>> -I/Library/Frameworks/R.framework/Resources/include/i386 >>> -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c Date.cpp -o Date.o >>> ../inst/include/Rcpp/internal/export.h: In function 'void >>> Rcpp::internal::export_range__dispatch(SEXPREC*, InputIterator, >>> Rcpp::traits::r_type_primitive_tag)': >>> ../inst/include/Rcpp/internal/export.h:56: internal compiler error: Bus >>> error >>> Please submit a full bug report, >>> with preprocessed source if appropriate. >>> See <URL:http://developer.apple.com/bugreporter> for instructions. >>> make: *** [Date.o] Error 1 >>> ERROR: compilation failed for package ‘Rcpp’ >>> * removing ‘/Users/knoblauch/Library/R/2.11/library/Rcpp’ >>> * restoring previous ‘/Users/knoblauch/Library/R/2.11/library/Rcpp’ >>> >>> So, still the same problem. Could this be a Leopard vs Snow Leopard >>> problem? >>> >>> Thanks. >>> >>> best, >>> >>> Ken >>> >>> PS, I'll subscribe shortly, but went ahead and tried your >>> suggestion first. >>> >>> >>> >>> >>> Quoting Romain Francois <rom...@r-enthusiasts.com>: >>> >>>> Bonjour Ken, >>>> >>>> We usually encourage people to use the mailing list (cc'ed) rather than >>>> the maintainer address (you would need to subsribe first) >>>> http://lists.r-forge.r-project.org/mailman/listinfo/rcpp-devel >>>> >>>> I think this was fixed and the version 0.8.4 is on CRAN incoming. >>>> >>>> Could you try the svn version and let us know if it compiles fine, it >>>> certainly does for me on Snow Leopard. >>>> >>>> $ svn checkout svn://svn.r-forge.r-project.org/svnroot/rcpp/pkg >>>> $ R CMD INSTALL Rcpp >>>> >>>> Thanks for your interest in Rcpp. >>>> >>>> FWIW, my version of gcc (on snow leopard) is: >>>> >>>> $ gcc --version >>>> i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5659) >>>> Copyright (C) 2007 Free Software Foundation, Inc. >>>> This is free software; see the source for copying conditions. There is NO >>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR >>>> PURPOSE. >>>> >>>> ... time passes ... >>>> >>>> Now this does sound familiar and I think we have seen some similar >>>> errors when Rcpp was inadvertently built with gcc 4.0 on CRAN >>>> >>>> Romain >>>> >>>> Le 13/07/10 13:38, Ken Knoblauch a écrit : >>>>> Hi, >>>>> >>>>> I'm wondering if you can provide any suggestions for installing >>>>> Rcpp on Mac or whether I should await the appearance of a binary? >>>>> >>>>> This is the error message that I get: >>>>> >>>>> R CMD INSTALL --no-multiarch -l ~/Library/R/2.11/library/ >>>>> Rcpp_0.8.3.tar.gz >>>>> * installing *source* package ‘Rcpp’ ... >>>>> ** libs >>>>> *** arch - i386 >>>>> g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include >>>>> -I/Library/Frameworks/R.framework/Resources/include/i386 >>>>> -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c Date.cpp -o >>>>> Date.o >>>>> ../inst/include/Rcpp/internal/export.h: In function 'void >>>>> Rcpp::internal::export_range__dispatch(SEXPREC*, InputIterator, >>>>> Rcpp::traits::r_type_primitive_tag)': >>>>> ../inst/include/Rcpp/internal/export.h:56: internal compiler error: Bus >>>>> error >>>>> Please submit a full bug report, >>>>> with preprocessed source if appropriate. >>>>> See <URL:http://developer.apple.com/bugreporter> for instructions. >>>>> make: *** [Date.o] Error 1 >>>>> ERROR: compilation failed for package ‘Rcpp’ >>>>> * removing ‘/Users/knoblauch/Library/R/2.11/library/Rcpp’ >>>>> * restoring previous ‘/Users/knoblauch/Library/R/2.11/library/Rcpp’ >>>>> >>>>> Is this a question of having the right compiler or ??? >>>>> >>>>> I did this from the command line but my sessionInfo is: >>>>> R version 2.11.1 Patched (2010-07-09 r52501) >>>>> i386-apple-darwin9.8.0 >>>>> >>>>> locale: >>>>> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 >>>>> >>>>> attached base packages: >>>>> [1] stats graphics grDevices utils datasets methods >>>>> [7] base >>>>> >>>>> I don't have problems compiling any other packages from source except >>>>> lme4a, so I would be greatful for any guidance. >>>>> >>>>> Thanks. >>>>> >>>>> Best, >>>>> >>>>> Ken >> >> >> >> -- >> Romain Francois >> Professional R Enthusiast >> +33(0) 6 28 91 30 30 >> http://romainfrancois.blog.free.fr >> |- http://bit.ly/bc8jNi : Rcpp 0.8.4 >> |- http://bit.ly/dz0RlX : bibtex 0.2-1 >> `- http://bit.ly/a5CK2h : Les estivales 2010 > > > > -- > Ken Knoblauch > Inserm U846 > Stem-cell and Brain Research Institute > Department of Integrative Neurosciences > 18 avenue du Doyen Lépine > 69500 Bron > France > tel: +33 (0)4 72 91 34 77 > fax: +33 (0)4 72 91 34 61 > portable: +33 (0)6 84 10 64 10 > http://www.sbri.fr/members/kenneth-knoblauch.html > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac
