If it helps at all I had the exact same error installing Rcpp v0.8.1 (the package from CRAN). My setup: gcc 4.3 (g++-mp-4.3 macports version), os 10.5.8, using R 2.11 (macports version). The solution was to reinstall macports, use v0.8.3 and everything worked fine.
On Tue, Jul 13, 2010 at 12:04 PM, Ken Knoblauch <ken.knobla...@inserm.fr>wrote: > Hi Simon, > > The information wasn't in the mail that he forwarded but > I had communicated it in a previous mail. Sorry. > > > [Macintosh-83:~] knoblauch% gcc --version > i686-apple-darwin9-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5577) > > [Macintosh-83:~] knoblauch% uname -r > 9.8.0 > > > I'm currently working with Mac OS X 10.5.8 and have Xcode 3.1.4. > > Also, > > Macintosh-83:~] knoblauch% gfortran --version > GNU Fortran (GCC) 4.2.3 > > Copyright (C) 2007 Free Software Foundation, Inc. > > if that is of use. > > I'll give reinstalling Xcode a try. I hadn't thought of > that. Thanks. > > Ken > > > Quoting Simon Urbanek <simon.urba...@r-project.org>: > > >> On Jul 13, 2010, at 8:13 AM, Ken Knoblauch wrote: >> >> Thanks. I'm in mode d'attente... >>> >>> >> I did not see the exact OS version mentioned anywhere but as Romain >> pointed out it's working just fine on OS X 10.5.8 with gcc 5577: >> >> hagal:~$ gcc --version >> i686-apple-darwin9-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5577) >> Copyright (C) 2007 Free Software Foundation, Inc. >> This is free software; see the source for copying conditions. There is NO >> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR >> PURPOSE. >> >> hagal:~$ uname -r >> 9.8.0 >> >> >> [...] >> * installing *source* package 'Rcpp' ... >> ** libs >> *** arch - i386 >> g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include >> -I/Library/Frameworks/R.framework/Resources/include/i386 >> -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c Date.cpp -o >> Date.o >> g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include >> -I/Library/Frameworks/R.framework/Resources/include/i386 >> -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c DateVector.cpp >> -o DateVector.o >> g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include >> -I/Library/Frameworks/R.framework/Resources/include/i386 >> -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c Datetime.cpp >> -o Datetime.o >> [...] >> >> So my only advice really is to re-install Xcode... >> >> Cheers, >> Simon >> >> >> >>> Quoting Romain Francois <romain.franc...@dbmail.com>: >>> >>> >>>> Le 13/07/10 13:59, Ken Knoblauch a écrit : >>>> >>>>> Salut Romain, >>>>> >>>>> Thanks for your rapid response. Toujours pas de chance. >>>>> >>>>> Just for verification, my gcc >>>>> >>>>> [Macintosh-83:~] knoblauch% gcc --version >>>>> i686-apple-darwin9-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5577) >>>>> Copyright (C) 2007 Free Software Foundation, Inc. >>>>> This is free software; see the source for copying conditions. There is >>>>> NO >>>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR >>>>> PURPOSE. >>>>> >>>> >>>> IIRC, this is the version (both OS and compiler version) that is used >>>> on CRAN so there is nothing fundamentally wrong about these. >>>> >>>> I'm cc'ing the r-sig-mac mailing list where people might have more >>>> clues, as I am afraid I'm short :-( >>>> >>>> Romain >>>> >>>> [Macintosh-83:~] knoblauch% svn checkout >>>>> svn://svn.r-forge.r-project.org/svnroot/rcpp/pkg >>>>> A pkg/RcppExamples >>>>> ... >>>>> >>>>> [Macintosh-83:~] knoblauch% cd pkg >>>>> [Macintosh-83:~/pkg] knoblauch% R CMD INSTALL -l >>>>> ~/Library/R/2.11/library/ Rcpp >>>>> * installing *source* package Rcpp ... >>>>> ** libs >>>>> *** arch - i386 >>>>> g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include >>>>> -I/Library/Frameworks/R.framework/Resources/include/i386 >>>>> -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c Date.cpp -o >>>>> Date.o >>>>> ../inst/include/Rcpp/internal/export.h: In function 'void >>>>> Rcpp::internal::export_range__dispatch(SEXPREC*, InputIterator, >>>>> Rcpp::traits::r_type_primitive_tag)': >>>>> ../inst/include/Rcpp/internal/export.h:56: internal compiler error: Bus >>>>> error >>>>> Please submit a full bug report, >>>>> with preprocessed source if appropriate. >>>>> See <URL:http://developer.apple.com/bugreporter> for instructions. >>>>> make: *** [Date.o] Error 1 >>>>> ERROR: compilation failed for package Rcpp >>>>> * removing /Users/knoblauch/Library/R/2.11/library/Rcpp >>>>> * restoring previous /Users/knoblauch/Library/R/2.11/library/Rcpp >>>>> >>>>> So, still the same problem. Could this be a Leopard vs Snow Leopard >>>>> problem? >>>>> >>>>> Thanks. >>>>> >>>>> best, >>>>> >>>>> Ken >>>>> >>>>> PS, I'll subscribe shortly, but went ahead and tried your >>>>> suggestion first. >>>>> >>>>> >>>>> >>>>> >>>>> Quoting Romain Francois <rom...@r-enthusiasts.com>: >>>>> >>>>> Bonjour Ken, >>>>>> >>>>>> We usually encourage people to use the mailing list (cc'ed) rather >>>>>> than >>>>>> the maintainer address (you would need to subsribe first) >>>>>> http://lists.r-forge.r-project.org/mailman/listinfo/rcpp-devel >>>>>> >>>>>> I think this was fixed and the version 0.8.4 is on CRAN incoming. >>>>>> >>>>>> Could you try the svn version and let us know if it compiles fine, it >>>>>> certainly does for me on Snow Leopard. >>>>>> >>>>>> $ svn checkout svn://svn.r-forge.r-project.org/svnroot/rcpp/pkg >>>>>> $ R CMD INSTALL Rcpp >>>>>> >>>>>> Thanks for your interest in Rcpp. >>>>>> >>>>>> FWIW, my version of gcc (on snow leopard) is: >>>>>> >>>>>> $ gcc --version >>>>>> i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5659) >>>>>> Copyright (C) 2007 Free Software Foundation, Inc. >>>>>> This is free software; see the source for copying conditions. There is >>>>>> NO >>>>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR >>>>>> PURPOSE. >>>>>> >>>>>> ... time passes ... >>>>>> >>>>>> Now this does sound familiar and I think we have seen some similar >>>>>> errors when Rcpp was inadvertently built with gcc 4.0 on CRAN >>>>>> >>>>>> Romain >>>>>> >>>>>> Le 13/07/10 13:38, Ken Knoblauch a écrit : >>>>>> >>>>>>> Hi, >>>>>>> >>>>>>> I'm wondering if you can provide any suggestions for installing >>>>>>> Rcpp on Mac or whether I should await the appearance of a binary? >>>>>>> >>>>>>> This is the error message that I get: >>>>>>> >>>>>>> R CMD INSTALL --no-multiarch -l ~/Library/R/2.11/library/ >>>>>>> Rcpp_0.8.3.tar.gz >>>>>>> * installing *source* package Rcpp ... >>>>>>> ** libs >>>>>>> *** arch - i386 >>>>>>> g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include >>>>>>> -I/Library/Frameworks/R.framework/Resources/include/i386 >>>>>>> -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c Date.cpp -o >>>>>>> Date.o >>>>>>> ../inst/include/Rcpp/internal/export.h: In function 'void >>>>>>> Rcpp::internal::export_range__dispatch(SEXPREC*, InputIterator, >>>>>>> Rcpp::traits::r_type_primitive_tag)': >>>>>>> ../inst/include/Rcpp/internal/export.h:56: internal compiler error: >>>>>>> Bus >>>>>>> error >>>>>>> Please submit a full bug report, >>>>>>> with preprocessed source if appropriate. >>>>>>> See <URL:http://developer.apple.com/bugreporter> for instructions. >>>>>>> make: *** [Date.o] Error 1 >>>>>>> ERROR: compilation failed for package Rcpp >>>>>>> * removing /Users/knoblauch/Library/R/2.11/library/Rcpp >>>>>>> * restoring previous /Users/knoblauch/Library/R/2.11/library/Rcpp >>>>>>> >>>>>>> Is this a question of having the right compiler or ??? >>>>>>> >>>>>>> I did this from the command line but my sessionInfo is: >>>>>>> R version 2.11.1 Patched (2010-07-09 r52501) >>>>>>> i386-apple-darwin9.8.0 >>>>>>> >>>>>>> locale: >>>>>>> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 >>>>>>> >>>>>>> attached base packages: >>>>>>> [1] stats graphics grDevices utils datasets methods >>>>>>> [7] base >>>>>>> >>>>>>> I don't have problems compiling any other packages from source except >>>>>>> lme4a, so I would be greatful for any guidance. >>>>>>> >>>>>>> Thanks. >>>>>>> >>>>>>> Best, >>>>>>> >>>>>>> Ken >>>>>>> >>>>>> >>>> >>>> >>>> -- >>>> Romain Francois >>>> Professional R Enthusiast >>>> +33(0) 6 28 91 30 30 >>>> http://romainfrancois.blog.free.fr >>>> |- http://bit.ly/bc8jNi : Rcpp 0.8.4 >>>> |- http://bit.ly/dz0RlX : bibtex 0.2-1 >>>> `- http://bit.ly/a5CK2h : Les estivales 2010 >>>> >>> >>> >>> >>> -- >>> Ken Knoblauch >>> Inserm U846 >>> Stem-cell and Brain Research Institute >>> Department of Integrative Neurosciences >>> 18 avenue du Doyen Lépine >>> 69500 Bron >>> France >>> tel: +33 (0)4 72 91 34 77 >>> fax: +33 (0)4 72 91 34 61 >>> portable: +33 (0)6 84 10 64 10 >>> http://www.sbri.fr/members/kenneth-knoblauch.html >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> R-SIG-Mac@stat.math.ethz.ch >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>> >> >> >> > > > -- > Ken Knoblauch > Inserm U846 > Stem-cell and Brain Research Institute > Department of Integrative Neurosciences > 18 avenue du Doyen Lépine > 69500 Bron > France > tel: +33 (0)4 72 91 34 77 > fax: +33 (0)4 72 91 34 61 > portable: +33 (0)6 84 10 64 10 > http://www.sbri.fr/members/kenneth-knoblauch.html > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > -- Conrad Stack ----------------------- PSU Department of Biology 208 Mueller Lab University Park, PA 16802 cell: 814.409.8310 email: conrad.st...@gmail.com [[alternative HTML version deleted]]
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