Greetings all,
I am building some R simulations to assess patterns of different demographic
histories in simulated phylogenies which has me keeping track of a large number
of summary statistics for simulated gene trees and species trees. Over all I
have been very happy with the programs available in R but my one question so
far is: does anyone know a way to count deep coalescences in on gene trees
based upon some predefined species tree in R? I see that Mesquite does this and
perhaps Phylonet. I was just curious if anything like the count deep
coalescence function existed in R land.
Thanks for your help!
-Dan
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