Messages by Date
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2016/09/12
Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments?
Martin Dohrmann
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2016/09/12
Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments?
Bhuller, Ravneet
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2016/09/12
Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments?
Thibaut Jombart
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2016/09/12
Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments?
Liam J. Revell
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2016/09/12
Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments?
Joseph W. Brown
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2016/09/12
[R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments?
Bhuller, Ravneet
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2016/09/11
Re: [R-sig-phylo] fitDiscrete question - super large likelihood and AIC values
Liam J. Revell
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2016/09/10
Re: [R-sig-phylo] fitDiscrete question - super large likelihood and AIC values
Lei Yang
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2016/09/10
Re: [R-sig-phylo] fitDiscrete question - super large likelihood and AIC values
Liam J. Revell
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2016/09/10
[R-sig-phylo] fitDiscrete question - super large likelihood and AIC values
Lei Yang
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2016/09/09
Re: [R-sig-phylo] ape - nj, mvr questions
Emmanuel Paradis
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2016/09/07
Re: [R-sig-phylo] Missing States in ML Reconstruction of Discrete Ancestral States (phytools, ape)
Eduardo Ascarrunz
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2016/09/06
[R-sig-phylo] ape - nj, mvr questions
Shai Tal
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2016/09/05
Re: [R-sig-phylo] suset DNAbin
Emmanuel Paradis
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2016/09/05
Re: [R-sig-phylo] suset DNAbin
dga...@huskers.unl.edu
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2016/09/05
Re: [R-sig-phylo] ape: chronos
Emmanuel Paradis
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2016/09/05
Re: [R-sig-phylo] subset DNAbin
Liam J. Revell
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2016/09/05
[R-sig-phylo] ape: chronos
Daniel Lang
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2016/09/04
Re: [R-sig-phylo] subset DNAbin
Andreas Kolter
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2016/09/04
[R-sig-phylo] suset DNAbin
Kirston Barton
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2016/09/01
Re: [R-sig-phylo] Query about Phylogenetics in R
Liam J. Revell
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2016/09/01
Re: [R-sig-phylo] Query about Phylogenetics in R
Vojtěch Zeisek
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2016/09/01
Re: [R-sig-phylo] Query about Phylogenetics in R
Bhuller, Ravneet
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2016/08/31
Re: [R-sig-phylo] Query about Phylogenetics in R
Bhuller, Ravneet
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2016/08/31
Re: [R-sig-phylo] Query about Phylogenetics in R
Liam J. Revell
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2016/08/31
Re: [R-sig-phylo] Query about Phylogenetics in R
Brian O'Meara
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2016/08/31
Re: [R-sig-phylo] Query about Phylogenetics in R
Vojtěch Zeisek
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2016/08/31
[R-sig-phylo] Query about Phylogenetics in R
Bhuller, Ravneet
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2016/08/29
Re: [R-sig-phylo] How to contribute?
Emmanuel Paradis
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2016/08/19
Re: [R-sig-phylo] Measurement error for tips with only 1 measured specimen (OUwie)
Liam J. Revell
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2016/08/19
Re: [R-sig-phylo] Ultrametric tree not recognized
Klaus Schliep
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2016/08/19
Re: [R-sig-phylo] Ultrametric tree not recognized
Emmanuel Paradis
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2016/08/18
[R-sig-phylo] Is there a way to “layer” multiple distance matrices onto a single PCoA plot?
Shirley Lang
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2016/08/18
[R-sig-phylo] Gathering richness information for Medusa
Massana, Kathryn
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2016/08/18
Re: [R-sig-phylo] Measurement error for tips with only 1 measured specimen (OUwie)
Rafael S. Marcondes
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2016/08/18
[R-sig-phylo] ggtree paper published
Yu, Guangchuang
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2016/08/17
Re: [R-sig-phylo] Ultrametric tree not recognized
Klaus Schliep
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2016/08/17
Re: [R-sig-phylo] Measurement error for tips with only 1 measured specimen (OUwie)
Rafael S. Marcondes
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2016/08/17
Re: [R-sig-phylo] Measurement error for tips with only 1 measured specimen (OUwie)
Brian O'Meara
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2016/08/17
Re: [R-sig-phylo] Ultrametric tree not recognized
Emmanuel Paradis
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2016/08/16
Re: [R-sig-phylo] Measurement error for tips with only 1 measured specimen (OUwie)
Liam J. Revell
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2016/08/16
Re: [R-sig-phylo] Measurement error for tips with only 1 measured specimen (OUwie)
Santiago Claramunt
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2016/08/16
Re: [R-sig-phylo] Measurement error for tips with only 1 measured specimen (OUwie)
Liam J. Revell
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2016/08/16
[R-sig-phylo] Measurement error for tips with only 1 measured specimen (OUwie)
Rafael S. Marcondes
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2016/08/16
Re: [R-sig-phylo] Ultrametric tree not recognized
Joseph W. Brown
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2016/08/16
Re: [R-sig-phylo] Ultrametric tree not recognized
Klaus Schliep
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2016/08/16
Re: [R-sig-phylo] Ultrametric tree not recognized
Martin Dohrmann
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2016/08/16
Re: [R-sig-phylo] Ultrametric tree not recognized
Joseph W. Brown
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2016/08/16
Re: [R-sig-phylo] Ultrametric tree not recognized
Klaus Schliep
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2016/08/16
Re: [R-sig-phylo] Ultrametric tree not recognized
Martin Dohrmann
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2016/08/16
Re: [R-sig-phylo] Ultrametric tree not recognized
Joseph W. Brown
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2016/08/16
Re: [R-sig-phylo] Ultrametric tree not recognized
Martin Dohrmann
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2016/08/16
Re: [R-sig-phylo] Ultrametric tree not recognized
Liam J. Revell
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2016/08/16
[R-sig-phylo] Ultrametric tree not recognized
Martin Dohrmann
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2016/08/16
[R-sig-phylo] How to contribute?
Richel Bilderbeek
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2016/08/12
[R-sig-phylo] BAMM / BAMMtools reliability
Dan Rabosky
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2016/08/11
Re: [R-sig-phylo] Unable to reorder any phylo object with reorder.phylo
Zach Culumber
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2016/08/11
Re: [R-sig-phylo] Unable to reorder any phylo object with reorder.phylo
Liam Revell
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2016/08/11
[R-sig-phylo] Unable to reorder any phylo object with reorder.phylo
Zach Culumber
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2016/08/09
[R-sig-phylo] Na/Nan/Inf error related to alpha value using corMartins in PGLS
Church, Samuel
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2016/08/04
[R-sig-phylo] 'Phylogenetic data analysis using R - STATS COURSE'
Oliver Hooker
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2016/08/03
[R-sig-phylo] model assumptions and optimizing lambda when running Pgls across a block of trees
Jesse Delia
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2016/08/03
Re: [R-sig-phylo] statistical tests for phylogenetic independent contrasts
Joe Felsenstein
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2016/08/03
Re: [R-sig-phylo] statistical tests for phylogenetic independent contrasts
Manabu Sakamoto
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2016/08/03
[R-sig-phylo] statistical tests for phylogenetic independent contrasts
Vivek
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2016/08/03
[R-sig-phylo] failure of mvrs (tree construction based on the minimum variance reduction) - workaround?
Oliver Ratmann
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2016/07/20
Re: [R-sig-phylo] extracting from mrbayes
David Bapst
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2016/07/19
[R-sig-phylo] extracting from mrbayes
John Denton
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2016/07/11
[R-sig-phylo] When we say a trait is phylogenetically labile
Chen, Ting-Wen
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2016/07/11
[R-sig-phylo] Nantucket phylogeny developeR bootcamp
Liam J. Revell
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2016/07/10
Re: [R-sig-phylo] data anlysis
Theodore Garland Jr
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2016/07/10
[R-sig-phylo] data anlysis
Rodrigo Gavira
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2016/07/07
Re: [R-sig-phylo] suppress axes in phenogram()
Jacob Berv
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2016/07/07
Re: [R-sig-phylo] suppress axes in phenogram()
GRAHAM JAMES SLATER
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2016/07/07
Re: [R-sig-phylo] suppress axes in phenogram()
Jacob Berv
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2016/07/07
Re: [R-sig-phylo] suppress axes in phenogram()
Jacob Berv
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2016/07/07
Re: [R-sig-phylo] suppress axes in phenogram()
Liam J. Revell
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2016/07/07
[R-sig-phylo] suppress axes in phenogram()
Jacob Berv
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2016/07/07
Re: [R-sig-phylo] 'T151: New Approaches to Phylogenetic Paleobiology' at GSA Annual Meeting 2016. Sept 25-28 in Denver
David Bapst
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2016/07/07
Re: [R-sig-phylo] Chronos function in ape
Emmanuel Paradis
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2016/07/06
Re: [R-sig-phylo] Chronos function in ape
Brian O'Meara
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2016/07/06
[R-sig-phylo] Chronos function in ape
Marco Fracassetti
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2016/07/06
Re: [R-sig-phylo] Bug report for CDF.birth.death.R
Emmanuel Paradis
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2016/07/05
Re: [R-sig-phylo] Reconstruction of ancestral character state with no organ
Wu, Cheng-Chiang
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2016/07/05
[R-sig-phylo] Bug report for CDF.birth.death.R
Niko Yasui
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2016/07/04
Re: [R-sig-phylo] get divergence date for all tips on a chronogram
Emmanuel Paradis
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2016/07/04
[R-sig-phylo] get divergence date for all tips on a chronogram
Chris Buddenhagen
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2016/07/03
Re: [R-sig-phylo] Reconstruction of ancestral character state with no organ
Liam J. Revell
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2016/07/01
Re: [R-sig-phylo] Adjust position of tip labels in plot.phylo
Kamila Naxerova
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2016/07/01
[R-sig-phylo] Reconstruction of ancestral character state with no organ
Wu, Cheng-Chiang
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2016/07/01
Re: [R-sig-phylo] Adjust position of tip labels in plot.phylo
Emmanuel Paradis
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2016/07/01
Re: [R-sig-phylo] Adjust position of tip labels in plot.phylo
Emmanuel Paradis
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2016/06/30
Re: [R-sig-phylo] Adjust position of tip labels in plot.phylo
Kamila Naxerova
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2016/06/29
Re: [R-sig-phylo] Adjust position of tip labels in plot.phylo
Liam J. Revell
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2016/06/29
[R-sig-phylo] Adjust position of tip labels in plot.phylo
Kamila Naxerova
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2016/06/29
Re: [R-sig-phylo] chronos ape package does it return confidence intervals too?
Emmanuel Paradis
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2016/06/28
[R-sig-phylo] chronos ape package does it return confidence intervals too?
Chris Buddenhagen
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2016/06/19
[R-sig-phylo] Nantucket phylogeny developeR bootcamp
Klaus Schliep
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2016/06/18
Re: [R-sig-phylo] root in mvOU
Julien Clavel
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2016/06/14
Re: [R-sig-phylo] Error in plotBS when number of taxa is small
Klaus Schliep
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2016/06/14
[R-sig-phylo] Error in plotBS when number of taxa is small
Kamila Naxerova
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2016/06/14
Re: [R-sig-phylo] Pagel 94 Baysian Version 3 states?
Manabu Sakamoto
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2016/06/14
Re: [R-sig-phylo] Pagel 94 Baysian Version 3 states?
mailbox Franz
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2016/06/14
Re: [R-sig-phylo] Pagel 94 Baysian Version 3 states?
Manabu Sakamoto
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2016/06/14
[R-sig-phylo] Pagel 94 Baysian Version 3 states?
mailbox Franz
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2016/06/07
Re: [R-sig-phylo] continued maintenance of the R-Phylo wiki
Vojtěch Zeisek
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2016/06/07
Re: [R-sig-phylo] continued maintenance of the R-Phylo wiki
Hilmar Lapp
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2016/06/07
Re: [R-sig-phylo] continued maintenance of the R-Phylo wiki
Vojtěch Zeisek
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2016/06/07
Re: [R-sig-phylo] continued maintenance of the R-Phylo wiki
Hilmar Lapp
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2016/06/05
[R-sig-phylo] multi-regime OU models and PGLS
saurabh
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2016/06/03
[R-sig-phylo] genetic data analysis in R short course, Glasgow 16-20 Aug 2016
Thibaut Jombart
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2016/05/30
Re: [R-sig-phylo] identify duplicate topologies and add corresponding values
Liam J. Revell
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2016/05/30
Re: [R-sig-phylo] identify duplicate topologies and add corresponding values
Emmanuel Paradis
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2016/05/30
Re: [R-sig-phylo] identify duplicate topologies and add corresponding values
Liam J. Revell
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2016/05/30
[R-sig-phylo] identify duplicate topologies and add corresponding values
John Denton
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2016/05/29
[R-sig-phylo] Simulating datasets under models with very low rates
Michael Foisy
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2016/05/25
Re: [R-sig-phylo] root tree in ape 3.4 vs 3.2
Emmanuel Paradis
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2016/05/25
[R-sig-phylo] root tree in ape 3.4 vs 3.2
Tomas Fer
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2016/05/24
Re: [R-sig-phylo] Error in trees[[i]] : subscript out of bounds
Emmanuel Paradis
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2016/05/24
[R-sig-phylo] Problem with drop.clade/drop.tip function?
Gopal Murali
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2016/05/23
Re: [R-sig-phylo] Error in trees[[i]] : subscript out of bounds
Sergio Ferreira Cardoso
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2016/05/23
Re: [R-sig-phylo] Error in trees[[i]] : subscript out of bounds
Emmanuel Paradis
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2016/05/23
Re: [R-sig-phylo] Error in trees[[i]] : subscript out of bounds
Liam J. Revell
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2016/05/23
[R-sig-phylo] Error in trees[[i]] : subscript out of bounds
Sergio Ferreira Cardoso
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2016/05/19
Re: [R-sig-phylo] Using bind.tree on simmaps
Liam J. Revell
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2016/05/18
[R-sig-phylo] Using bind.tree on simmaps
Christie Ziegler
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2016/05/13
[R-sig-phylo] Unequal line widths for branches when sent to pdf in R
Chris Buddenhagen
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2016/05/13
Re: [R-sig-phylo] Associated r created graphs or external images with specific nodes on a phylogeny
Andreas Kolter
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2016/05/11
Re: [R-sig-phylo] Associated r created graphs or external images with specific nodes on a phylogeny
Liam J. Revell
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2016/05/11
[R-sig-phylo] Associated r created graphs or external images with specific nodes on a phylogeny
Chris Buddenhagen
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2016/05/11
Re: [R-sig-phylo] Simulating data under precursor models
Liam J. Revell
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2016/05/11
Re: [R-sig-phylo] Simulating data under precursor models
Liam J. Revell
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2016/05/11
Re: [R-sig-phylo] Simulating data under precursor models
Michael Foisy
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2016/05/11
[R-sig-phylo] Simulating data under precursor models
Michael Foisy
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2016/05/10
Re: [R-sig-phylo] simulating continuous data
Theodore Garland Jr
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2016/05/10
Re: [R-sig-phylo] simulating continuous data
Bryan McLean
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2016/05/10
Re: [R-sig-phylo] simulating continuous data
Theodore Garland Jr
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2016/05/10
Re: [R-sig-phylo] simulating continuous data
Joe Felsenstein
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2016/05/10
[R-sig-phylo] simulating continuous data
Bryan McLean
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2016/05/04
Re: [R-sig-phylo] [function like ratebystate, but for discrete characters?]
Brian O'Meara
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2016/05/03
Re: [R-sig-phylo] [function like ratebystate, but for discrete characters?]
Jacob Berv
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2016/05/03
Re: [R-sig-phylo] [function like ratebystate, but for discrete characters?]
Michael Foisy
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2016/05/03
Re: [R-sig-phylo] [function like ratebystate, but for discrete characters?]
Liam J. Revell
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2016/05/03
[R-sig-phylo] [function like ratebystate, but for discrete characters?]
Michael Foisy
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2016/04/26
Re: [R-sig-phylo] R package for testing correlation between two multistate discrete traits on a phylogeny?
Arbuckle, Kevin
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2016/04/25
[R-sig-phylo] R package for testing correlation between two multistate discrete traits on a phylogeny?
Wu, Cheng-Chiang
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2016/04/20
Re: [R-sig-phylo] estimating the evolutionary rate of a continous trait
Emmanuel Paradis
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2016/04/20
Re: [R-sig-phylo] Testing different topological hypotheses - based on taxonomic treatments
Matthews, Luke
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2016/04/20
Re: [R-sig-phylo] estimating the evolutionary rate of a continous trait
Manabu Sakamoto
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2016/04/19
Re: [R-sig-phylo] Testing different topological hypotheses - based on taxonomic treatments
Jacob Berv
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2016/04/19
[R-sig-phylo] Fwd: Testing different topological hypotheses - based on taxonomic treatments
Chris Buddenhagen
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2016/04/18
Re: [R-sig-phylo] BiSSE/MacroCAIC on Non-Ultrametric Tree with Polytomies?
Brian A. Gill
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2016/04/15
Re: [R-sig-phylo] estimating the evolutionary rate of a continous trait
Hunt, Gene
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2016/04/15
Re: [R-sig-phylo] estimating the evolutionary rate of a continous trait
Brian O'Meara
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2016/04/15
[R-sig-phylo] estimating the evolutionary rate of a continous trait
Belinda Kahnt
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2016/04/15
Re: [R-sig-phylo] BiSSE/MacroCAIC on Non-Ultrametric Tree with Polytomies?
Brian A. Gill
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2016/04/15
Re: [R-sig-phylo] BiSSE/MacroCAIC on Non-Ultrametric Tree with Polytomies?
David Bapst
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2016/04/14
Re: [R-sig-phylo] BiSSE/MacroCAIC on Non-Ultrametric Tree with Polytomies?
Joe Felsenstein
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2016/04/14
Re: [R-sig-phylo] BiSSE/MacroCAIC on Non-Ultrametric Tree with Polytomies?
Joe Felsenstein
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2016/04/14
[R-sig-phylo] BiSSE/MacroCAIC on Non-Ultrametric Tree with Polytomies?
Brian A. Gill
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2016/04/13
Re: [R-sig-phylo] Normal distribution in trait values before testing for phylogenetic signals?
Theodore Garland Jr
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2016/04/13
[R-sig-phylo] Normal distribution in trait values before testing for phylogenetic signals?
Ting-Wen Timothy Chen
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2016/04/11
[R-sig-phylo] Summarizing trait values through time
Jacob Berv
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2016/04/09
Re: [R-sig-phylo] Testing for relationship between one categorical and one continuous variable in a phylogenetic framework.
Sean McKenzie
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2016/04/09
Re: [R-sig-phylo] Testing for relationship between one categorical and one continuous variable in a phylogenetic framework.
Joe Felsenstein
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2016/04/09
Re: [R-sig-phylo] Testing for relationship between one categorical and one continuous variable in a phylogenetic framework.
Liam J. Revell
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2016/04/08
Re: [R-sig-phylo] Testing for relationship between one categorical and one continuous variable in a phylogenetic framework.
Joe Felsenstein
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2016/04/08
Re: [R-sig-phylo] Testing for relationship between one categorical and one continuous variable in a phylogenetic framework.
Theodore Garland Jr
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2016/04/08
Re: [R-sig-phylo] Testing for relationship between one categorical and one continuous variable in a phylogenetic framework.
Alejandro Gonzalez Voyer
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2016/04/08
[R-sig-phylo] Testing for relationship between one categorical and one continuous variable in a phylogenetic framework.
Sean McKenzie
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2016/04/04
Re: [R-sig-phylo] Determining Order of Trait Evolution
Joe Felsenstein
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2016/04/04
Re: [R-sig-phylo] Determining Order of Trait Evolution
Heath Blackmon
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2016/04/04
Re: [R-sig-phylo] Determining Order of Trait Evolution
Alejandro Gonzalez Voyer
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2016/04/04
[R-sig-phylo] Determining Order of Trait Evolution
Gavin McLean Leighton
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2016/04/04
[R-sig-phylo] 'T151: New Approaches to Phylogenetic Paleobiology' at GSA Annual Meeting 2016. Sept 25-28 in Denver
David Bapst
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2016/04/02
Re: [R-sig-phylo] Hi all.
Christian Hodar
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2016/04/02
Re: [R-sig-phylo] [Bug] root.R: object 'fuseRoot' not found
Emmanuel Paradis
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2016/04/02
Re: [R-sig-phylo] Hi all.
Emmanuel Paradis
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2016/04/01
Re: [R-sig-phylo] Phylogenetics and Newick Expressions in R
Liam J. Revell
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2016/04/01
[R-sig-phylo] [Bug] root.R: object 'fuseRoot' not found
Li, Fan
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2016/04/01
[R-sig-phylo] Phylogenetics and Newick Expressions in R
Sara Reese
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2016/04/01
[R-sig-phylo] Hi all.
Christian Hodar
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2016/03/22
[R-sig-phylo] Heteroplasmy in phylogenetic analysis
Jorge Carlos Berny Mier y Teran
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2016/03/19
Re: [R-sig-phylo] Using compar.gee on dataframes with multiples of the same species
krzysztofbartoszek
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2016/03/19
[R-sig-phylo] Using compar.gee on dataframes with multiples of the same species
Skylar Lobdell
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2016/03/18
Re: [R-sig-phylo] [MORPHMET] model II regression statistics PAST
Joe Felsenstein
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2016/03/10
Re: [R-sig-phylo] summary stats for comparative methods p-values
Simon Blomberg
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2016/03/10
Re: [R-sig-phylo] summary stats for comparative methods p-values
Joe Felsenstein
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2016/03/10
[R-sig-phylo] add.random() (phytools) assumptions
Bruno de Medeiros
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2016/03/10
Re: [R-sig-phylo] summary stats for comparative methods p-values
Simon Joly
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2016/03/10
Re: [R-sig-phylo] summary stats for comparative methods p-values
David Bapst
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2016/03/10
[R-sig-phylo] summary stats for comparative methods p-values
Darrin Hulsey
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2016/03/09
[R-sig-phylo] Error in split MuSSE analysis (diversitree::make.musse.split)
roee maor
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2016/03/04
Re: [R-sig-phylo] test random drift only?
Alejandro Gonzalez Voyer
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2016/03/04
[R-sig-phylo] test random drift only?
f.k...@mailbox.org
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2016/03/04
Re: [R-sig-phylo] How to use categorical vectors in package ape for phylogenetic independent contrasts
Theodore Garland Jr
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2016/03/04
Re: [R-sig-phylo] How to use categorical vectors in package ape for phylogenetic independent contrasts
Emmanuel Paradis
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2016/03/04
Re: [R-sig-phylo] root in mvOU
Julien Clavel
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2016/03/04
Re: [R-sig-phylo] standard error (NaN) in model ARD
Emmanuel Paradis
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2016/03/03
[R-sig-phylo] root in mvOU
Jarrod Hadfield