Emmanuel Paradis answered Daniel Barker's inquiry: >> Is there a review or list of ~every specific nucleotide substitution model >> that has been proposed or used in the literature (with references)?
> Hi Daniel, > > Have you looked at the help page of dist.dna? The list of references there is > focused on calculating distances but some are general. There are a few more > references in my book too. I suggest you also look at "Inferring Phylogenies". where you will find, in the section on "Other distances" in Chapter 13 that Andrey Zharkikh had a very good paper in 1994 covering many of the distances that had been invented up to that date, and explaining relationships between them: Zharkikh, A. 1994. Estimation of evolutionary distances between nucleotide sequences. Journal of Molecular Evolution 39: 315.329 Joe ---- Joe Felsenstein j...@gs.washington.edu Department of Genome Sciences and Department of Biology, University of Washington, Box 355065, Seattle, WA 98195-5065 USA _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
