Dear Ben, You will find scripts that will help you perform some of the tasks you want to do (read SplitsTree nexus files, calculate network patristic distances) in the supplementary material that comes with this paper:
Volkmann L., Martyn I., Moulton V., Spillner A., Mooers A.O. 2014. Prioritizing Populations for Conservation Using Phylogenetic Networks. PLoS ONE. 9:e88945. It should be a good start... Best wishes, Simon 2014-11-04 6:58 GMT-05:00 Benjamin Ward (ENV) <b.w...@uea.ac.uk>: > Hi, > > I have a need to collect from some networks I've generated in Splitstree, > the patriotic distances between each pair of taxa, and also the number of > splits or otherwise the amount of loop or web structure in the network. I > figured if I can read the .nex files generated by SplitsTree into an R > session with one or more of the Phylo packages I could easily extract this > information, make a table and do some plots. I've only used APE for tree > manipulation with R so far. What do I need to read in networks? > > Thanks, > Ben. > > > > [[alternative HTML version deleted]] > > _______________________________________________ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at > http://www.mail-archive.com/r-sig-phylo@r-project.org/ > [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
