Indeed, I had forgotten to rerun roxygen before my last commit, sorry. It should be OK now.
I've also put the source tarball from R CMD BUILD here, http://dl.dropbox.com/u/352834/cda_1.0.tar.gz Best regards, baptiste On 20 August 2010 08:42, Romain Francois <rom...@r-enthusiasts.com> wrote: > Le 20/08/10 07:36, baptiste auguie a écrit : >> >> Hi, >> >> My Makevars contains the following line, >> >> ## Use the R_HOME indirection to support installations of multiple R >> version >> PKG_LIBS = $(shell $(R_HOME)/bin/Rscript -e "Rcpp:::LdFlags()" ) >> $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) > > That looks ok. > > I can't R CMD INSTALL your package now because of something else. Some > collate issue of the R files, is this a roxygen issue by any chance ? > > But the compile step -- apart from some minor problems I'm sure you'll fix > -- seem fine : > > $ R CMD INSTALL cda > * installing to library ‘/Library/Frameworks/R.framework/Resources/library’ > * installing *source* package ‘cda’ ... > ** libs > *** arch - i386 > g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include > -I/Library/Frameworks/R.framework/Resources/include/i386 > -I/usr/local/include > -I"/Library/Frameworks/R.framework/Resources/library/Rcpp/include" > -I"/Library/Frameworks/R.framework/Resources/library/RcppArmadillo/include" > -fPIC -g -O3 -Wall -pipe -c cda.cpp -o cda.o > cda.cpp: In function ‘int progress_bar(double, double)’: > cda.cpp:36: warning: no return statement in function returning non-void > cda.cpp: In function ‘Rcpp::List linearExtinction(const arma::mat&, const > arma::cx_mat&, double)’: > cda.cpp:285: warning: unused variable ‘pi’ > cda.cpp: In function ‘int progress_bar(double, double)’: > cda.cpp:36: warning: control reaches end of non-void function > g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined > dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o > cda.so cda.o > /Library/Frameworks/R.framework/Versions/2.12/Resources/library/Rcpp/lib/i386/libRcpp.a > -L/Library/Frameworks/R.framework/Resources/lib/i386 -lRlapack > -L/Library/Frameworks/R.framework/Resources/lib/i386 -lRblas -lgfortran > -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework > -Wl,CoreFoundation > installation dans > /Library/Frameworks/R.framework/Resources/library/cda/libs/i386 > *** arch - x86_64 > g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include > -I/Library/Frameworks/R.framework/Resources/include/x86_64 > -I/usr/local/include > -I"/Library/Frameworks/R.framework/Resources/library/Rcpp/include" > -I"/Library/Frameworks/R.framework/Resources/library/RcppArmadillo/include" > -fPIC -g -O3 -Wall -pipe -c cda.cpp -o cda.o > cda.cpp: In function ‘int progress_bar(double, double)’: > cda.cpp:36: warning: no return statement in function returning non-void > cda.cpp: In function ‘Rcpp::List linearExtinction(const arma::mat&, const > arma::cx_mat&, double)’: > cda.cpp:285: warning: unused variable ‘pi’ > cda.cpp: In function ‘int progress_bar(double, double)’: > cda.cpp:36: warning: control reaches end of non-void function > g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined > dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o > cda.so cda.o > /Library/Frameworks/R.framework/Versions/2.12/Resources/library/Rcpp/lib/x86_64/libRcpp.a > -L/Library/Frameworks/R.framework/Resources/lib/x86_64 -lRlapack > -L/Library/Frameworks/R.framework/Resources/lib/x86_64 -lRblas -lgfortran > -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework > -Wl,CoreFoundation > installation dans > /Library/Frameworks/R.framework/Resources/library/cda/libs/x86_64 > ** R > Error in .install_package_code_files(".", instdir) : > les fichiers dans '/Users/romain/svn/photonics/pkg/cda/R' sont manquants > dans le champ 'Collate' : > povray.r > ERROR: unable to collate files for package ‘cda’ > * removing ‘/Library/Frameworks/R.framework/Resources/library/cda’ > * restoring previous ‘/Library/Frameworks/R.framework/Resources/library/cda’ > > >> which I obviously took from somewhere, perhaps automatically generated >> from package.skeleton, I don't remember. > > Probably from RcppArmadillo.package.skeleton > >> It's worked for me on two >> different machines (both Macs, though). >> >> Best regards, >> >> baptiste >> >> >> On 19 August 2010 23:50, Douglas Bates<ba...@stat.wisc.edu> wrote: >>> >>> On Thu, Aug 19, 2010 at 3:06 PM, baptiste auguie >>> <baptiste.aug...@googlemail.com> wrote: >>>> >>>> Dear all, >>>> >>>> I'm stumped by this error for my cda package on r-forge: >>>> >>>> Error in dyn.load(file, DLLpath = DLLpath, ...) : >>>> unable to load shared library '/tmp/Rinst2710053821/cda/libs/cda.so': >>>> /tmp/Rinst2710053821/cda/libs/cda.so: undefined symbol: zgetri_ >>>> >>>> >>>> https://r-forge.r-project.org/R/?group_id=160&log=build_src&pkg=cda&flavor=patched >>>> >>>> >>>> I don't have a clue what this means --- is this an incorrect >>>> dependency, an error in my C++ code, a known problem with r-forge, >>>> something I should have read in a vignette / manual ... ? It compiles >>>> fine on my machine (Mac OS 10.6). The package uses RcppArmadillo. >>> >>> The error means that there is a reference to one of the Lapack >>> functions, zgetri, which forms the inverse of a complex matrix using >>> its triangular factorization, and the symbol could not be found. What >>> does your cda/src/Makevars file contain? > > -- > Romain Francois > Professional R Enthusiast > +33(0) 6 28 91 30 30 > http://romainfrancois.blog.free.fr > |- http://bit.ly/bzoWrs : Rcpp svn revision 2000 > |- http://bit.ly/b8VNE2 : Rcpp at LondonR, oct 5th > `- http://bit.ly/aAyra4 : highlight 0.2-2 > > -- ____________________ Dr. Baptiste Auguié Departamento de Química Física, Universidade de Vigo, Campus Universitario, 36310, Vigo, Spain tel: +34 9868 18617 http://webs.uvigo.es/coloides ____________________ _______________________________________________ Rcpp-devel mailing list Rcpp-devel@lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
