I can't blame you there. "One ring to bind them" would be preferred.
Have you searched the RDKit discussion list archives regarding Python
version compatibility? I vaguely remember something about older versions of
Python in general, but I don't know if it applies to this case.
On Fri, Jun 10, 2011 at 1:00 PM, JP <jeanpaul.ebe...@inhibox.com> wrote:
>
> Hi there Kirk,
>
> Your suggestion was interesting to tinker with -- but it doesn't help my
> specific case.
>
> If I set the environment to work with python 2.7 (and RDKit), I break ROCKs
> functionality which I need from time to time.
> I do not want to stay switching between p2.4 and p2.7 in the same
> session...
>
>
>
>
> On 10 June 2011 19:20, Robert DeLisle <rkdeli...@gmail.com> wrote:
>
>> I will defer to Greg's expertise for a more accurate answer, but I would
>> suspect that the problem is the difference in using the system version of
>> Python and a version of RDKit that is built with a newer version of GCC.
>> You may be getting stuck in dependency confusion between the two versions.
>>
>> You should be able to build and install Python 2.7 without disturbing the
>> system's Python 2.4.3.
>>
>> -Kirk
>>
>>
>>
>>
>>
>>
>> On Fri, Jun 10, 2011 at 12:00 PM, JP <jeanpaul.ebe...@inhibox.com> wrote:
>>
>>> I am installing the brand new RDKit (2011_03_2) on CentOS (lol!) on a
>>> Friday evening (6.54pm here in Oxford)... So I probably deserve the misery
>>> of the following.
>>>
>>> I have already gone through the whole RDKit on Centos installation
>>> procedure and pain on other machines and I now am undaunted by it. Bring it
>>> on.
>>> Still I installed everything (almost) according to the book (
>>> http://code.google.com/p/rdkit/wiki/BuildingOnCentOS) with the exception
>>> that I stuck to Python 2.4.3 (Python 2.7, doesn't play nicely with Rocks)
>>>
>>> And I get this anti-fancy error message
>>>
>>> >>> from rdkit import Chem
>>> Traceback (most recent call last):
>>> File "<stdin>", line 1, in ?
>>> File "/share/apps/RDKit_2011_03_2/rdkit/Chem/__init__.py", line 18, in
>>> ?
>>> from rdkit import rdBase
>>> ImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9' not found
>>> (required by /share/apps/RDKit_2011_03_2/rdkit/rdBase.so)
>>>
>>> Any ideas?
>>>
>>> [jp@xxx build]$ echo $LD_LIBRARY_PATH
>>>
>>> /share/apps/RDKit_2011_03_2/lib:/share/apps/boost_1_46_1/lib:/opt/gridengine/lib/lx26-amd64:/share/apps/openbabel/lib:/usr/local/lib:/share/apps/openbabel/lib:
>>>
>>> [jp@xxx build]$ echo $PYTHONPATH
>>> :/share/apps/RDKit_2011_03_2
>>>
>>> [jp@xxx build]$ echo $RDBASE
>>> /share/apps/RDKit_2011_03_2
>>>
>>> Any sympathy will be greatly appreciated.
>>>
>>> Cheers
>>> JP
>>>
>>>
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>>
>
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