Dear all,
after succeeding some minutes before with installing RDKit I have now
trouble again.
I have a situation where I need to reinstall RdKit (build from source
http://www.blopig.com/blog/2013/02/how-to-install-rdkit-on-ubuntu-12-04/) in
order to work with the python module.
I get following errors when I start with python in a new terminal.
from rdkit import Chem
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ImportError: No module named rdkit
Note:
the error doesn't occur when I build from source again and work in the
same terminal. Does it mean that I have to build from source and ctest
everytime when I start a terminal or the PC?
Thanks in advance.
Best Regards,
Jessica Krause.
Dear Jean-Paul,
I would like to thank you for your help. Now I have installed the
RDKit_2014_03_1 on Ubuntu 14.04 with the link you mentioned above.
Thanks a lot! It saved me time with working more hours on installing
RDKit on Ubuntu. I have to mention that I reinstalled Ubuntu again to
avoid the errors I got all the time before. I am new to working with
Ubuntu and RDKit.
Thanks again!
Jessica
On 26.07.2014 17:44, JP wrote:
Not a direct solution to your problem, but have you tried the Ubuntu
specific instructions at:
http://www.blopig.com/blog/2013/02/how-to-install-rdkit-on-ubuntu-12-04/
I have installed it successfully on 14.04.
-
Jean-Paul Ebejer
Early Stage Researcher
On 24 July 2014 15:40, Jessica Krause <jessica.kra...@tu-bs.de
<mailto:jessica.kra...@tu-bs.de>> wrote:
Dear all,
I tried to install RDKit 2014 on Ubuntu 14.04 but I did
not succeed!
While executing the make command in the RDKit_2014_03_1/build
directory, I recieved the following error:
[ 0%] Built target inchi_support
[ 1%] Built target RDGeneral
[ 3%] Built target RDGeneral_static
[ 3%] Built target testDict
Linking CXX shared library ../../lib/libRDBoost.so
/usr/bin/ld: /usr/local/lib/libpython2.7.a(exceptions.o):
relocation R_X86_64_32 against `.rodata.str1.1' can not be used
when making a shared object; recompile with -fPIC
/usr/local/lib/libpython2.7.a: error adding symbols: Bad value
collect2: error: ld returned 1 exit status
make[2]: *** [lib/libRDBoost.so.1.2014.03.1] Error 1
make[1]: *** [Code/RDBoost/CMakeFiles/RDBoost.dir/all] Error 2
make: *** [all] Error 2
the environmental variables that I have used are:
export RDBASE=opt/RDKit_2014_03_1/
export
LD_LIBRARY_PATH=opt/RDKit_2014_03_1/build/lib/:usr/local/src/boost_1_55_0/libs/
export PYTHONPATH=opt/RDKit_2014_03_1/
Please help me with this problem.
Thanks in advance.
Regards,
Jessica Krause
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