Peter,
Thanks. Do you mean
-lLibA_static -lLibB_static -lLibC_static -lLibA_static -lLibB_static
-lLibC_static
?
So, by this way, we don't need to worry about the order of these three
libraries.
Best,
Yingfeng
On Wed, Mar 16, 2016 at 12:36 AM, Peter S. Shenkin <shen...@gmail.com>
wrote:
> I'm not sure how this works with modern linkers, but "back in the old
> days", you could kludge it by putting all libraries on the link line twice,
> This also resolved circular references.
>
> -P.
>
> On Wed, Mar 16, 2016 at 12:05 AM, Greg Landrum <greg.land...@gmail.com>
> wrote:
>
>> Though that would be useful information, I'm afraid that's not something
>> I've ever put together.
>>
>> -greg
>>
>>
>>
>> On Tue, Mar 15, 2016 at 6:26 PM, Yingfeng Wang <ywang...@gmail.com>
>> wrote:
>>
>>> Greg,
>>>
>>> Could you please give me an order of all libraries? Say, I want to link
>>> all RDKit static libraries. I know most of which could be unnecessary, but
>>> I just want to make my situation easy. So, if I cannot figure out a better
>>> plan, this way at least works.
>>>
>>> Thanks.
>>> Yingfeng
>>>
>>> On Mon, Mar 14, 2016 at 8:16 AM, Greg Landrum <greg.land...@gmail.com>
>>> wrote:
>>>
>>>>
>>>>
>>>> On Sat, Mar 12, 2016 at 5:00 AM, Yingfeng Wang <ywang...@gmail.com>
>>>> wrote:
>>>>
>>>>> Greg,
>>>>>
>>>>> Thanks. Your suggestion solves my problem. I add the following part in
>>>>> my compiling command.
>>>>>
>>>>> -L/Users/yingfeng/software/RDKit/rdkit-Release_2015_03_1/lib
>>>>> -lRDInchiLib -lInChi -lGraphMol -lRDGeneral
>>>>>
>>>>> and the complete compiling command is
>>>>>
>>>>> g++ -Wall -O2 -std=c++11 -I
>>>>> /Users/yingfeng/software/RDKit/rdkit-Release_2015_03_1/Code -I
>>>>> /Users/yingfeng/software/RDKit/rdkit-Release_2015_03_1/External -I
>>>>> /usr/local/Cellar/boost/1.60.0_1/include
>>>>> -L/Users/yingfeng/software/RDKit/rdkit-Release_2015_03_1/lib -lRDInchiLib
>>>>> -lInChi -lGraphMol -lRDGeneral -o MYTEST main.cpp
>>>>>
>>>>> Is there a way to figure out which library I should link? Actually, my
>>>>> backup plan is to link all libraries in
>>>>> /Users/yingfeng/software/RDKit/rdkit-Release_2015_03_1/lib
>>>>>
>>>>
>>>> That's one approach, but it's kind of overkill. :-)
>>>> The big thing is to know which library the functionality you are
>>>> calling comes from. You can generally tell this from the header files (i.e.
>>>> if you include something from "DataStructs", then you need to include the
>>>> DataStructs library). this isn't perfect because some libraries have
>>>> dependencies on others, but it often works The other approach is to look in
>>>> the RDKit source code at the CMakeLists.txt file for the libraries you are
>>>> using and look to see which extra libraries they include when building the
>>>> tests.
>>>>
>>>> This isn't very well documented. I think this kind of documentation is
>>>> tricky to generate, so I don't want to do it unless it's going to help a
>>>> large number of people, and it's not at all clear to me how many C++ RDKit
>>>> users there are.
>>>>
>>>> By the way, is there a way to guarantee that users using my binary file
>>>>> (e.g. MYTEST in this case) do not need to install RDKit? I tried -static,
>>>>> but it didn't work. For example, I hope a user can run MYTEST on another
>>>>> Mac without RDKit.
>>>>>
>>>>
>>>> If you link against the _static version of the libraries (i.e.
>>>> -lGraphMol_static instead of -lGraphMol), then you should end up with a
>>>> version that doesn't require an RDKit install to run. It can be trickier to
>>>> get these commands right because on many (all?) systems, there is an order
>>>> dependency to static linkage. So since SmilesParse_static depends on
>>>> GraphMol_static, GraphMol_static needs to appear *after* SmilesParse_static
>>>> in the link line.
>>>>
>>>> I hope this helps,
>>>> -greg
>>>>
>>>>
>>>>
>>>
>>
>>
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