Dear all,
I just tried to build the current Release_2016_03_2 with conda on Ubuntu
16.04 and ran into an error.
I used a fresh clone of conda-rdkit and changed the git tag in
rdkit/meta.yaml from Release_2016_03_1 to Release_2016_03_2.
Then:
$ conda build boost
This ran without problems. Then:
$ conda build rdkit
This gave the traceback shown below, which left me at a loss.
Does anyone have any ideas?
Many thanks in advance.
Kind regards,
Axel
Traceback:
[...]
checkout: 'Release_2016_03_2'
Cloning into '/home/pahl/anaconda3/conda-bld/work'...
done.
Note: checking out 'Release_2016_03_2'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:
git checkout -b <new-branch-name>
HEAD is now at e0c1c02... update release notes
==> git log -n1 <==
commit e0c1c0296a0632089ec02550a006d2e9bd0fec96
Author: Greg Landrum <greg.land...@gmail.com>
Date: Fri May 20 14:52:46 2016 +0200
update release notes
==> git describe --tags --dirty <==
Release_2016_03_2
==> git status <==
HEAD detached at Release_2016_03_2
nothing to commit, working directory clean
Applying patch: '/home/pahl/dev/github/conda-rdkit/rdkit/rdpaths.patch'
Patch level ambiguous, selecting least deep
patching file rdkit/CMakeLists.txt
Applying patch: '/home/pahl/dev/github/conda-rdkit/rdkit/rddepictor.patch'
patching file Code/GraphMol/Depictor/RDDepictor.cpp
Hunk #1 FAILED at 133.
1 out of 1 hunk FAILED -- saving rejects to file
Code/GraphMol/Depictor/RDDepictor.cpp.rej
Warning: failed to download source. If building, will try again after
downloading recipe dependencies.
Error was:
Command '['/usr/bin/patch', '-p0', '-i',
'/home/pahl/dev/github/conda-rdkit/rdkit/rddepictor.patch']' returned
non-zero exit status 1
An unexpected error has occurred, please consider sending the
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda-build/issues
Include the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/home/pahl/anaconda3/bin/conda-build", line 5, in <module>
sys.exit(main())
File
"/home/pahl/anaconda3/lib/python3.5/site-packages/conda_build/main_build.py",
line 140, in main
args_func(args, p)
File
"/home/pahl/anaconda3/lib/python3.5/site-packages/conda_build/main_build.py",
line 380, in args_func
args.func(args, p)
File
"/home/pahl/anaconda3/lib/python3.5/site-packages/conda_build/main_build.py",
line 327, in execute
dirty=args.dirty)
File
"/home/pahl/anaconda3/lib/python3.5/site-packages/conda_build/build.py",
line 487, in build
assert not need_source_download, "Source download failed. Please
investigate."
AssertionError: Source download failed. Please investigate.
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