Hi Axel,
Apologies that I forgot to update the conda-rdkit repo when I did the patch
release.
I just fixed the conda build recipe so that it uses 2016_03_2.
One note: when I built on ubuntu 16.04 I also needed to rebuild a local
copy of boost. You can do this by just doing a "conda build boost" before
"conda build rdkit"
Best,
-greg
On Thu, Jun 23, 2016 at 6:06 PM, Axel Pahl <axelp...@gmx.de> wrote:
> Dear all,
>
> I just tried to build the current Release_2016_03_2 with conda on Ubuntu
> 16.04 and ran into an error.
>
> I used a fresh clone of conda-rdkit and changed the git tag in
> rdkit/meta.yaml from Release_2016_03_1 to Release_2016_03_2.
> Then:
>
> $ conda build boost
> This ran without problems. Then:
>
> $ conda build rdkit
> This gave the traceback shown below, which left me at a loss.
> Does anyone have any ideas?
> Many thanks in advance.
>
> Kind regards,
> Axel
>
> Traceback:
> [...]
> checkout: 'Release_2016_03_2'
> Cloning into '/home/pahl/anaconda3/conda-bld/work'...
> done.
> Note: checking out 'Release_2016_03_2'.
>
> You are in 'detached HEAD' state. You can look around, make experimental
> changes and commit them, and you can discard any commits you make in this
> state without impacting any branches by performing another checkout.
>
> If you want to create a new branch to retain commits you create, you may
> do so (now or later) by using -b with the checkout command again. Example:
>
> git checkout -b <new-branch-name>
>
> HEAD is now at e0c1c02... update release notes
> ==> git log -n1 <==
>
> commit e0c1c0296a0632089ec02550a006d2e9bd0fec96
> Author: Greg Landrum <greg.land...@gmail.com>
> Date: Fri May 20 14:52:46 2016 +0200
>
> update release notes
>
>
> ==> git describe --tags --dirty <==
>
> Release_2016_03_2
>
>
> ==> git status <==
>
> HEAD detached at Release_2016_03_2
> nothing to commit, working directory clean
>
>
> Applying patch: '/home/pahl/dev/github/conda-rdkit/rdkit/rdpaths.patch'
> Patch level ambiguous, selecting least deep
> patching file rdkit/CMakeLists.txt
> Applying patch: '/home/pahl/dev/github/conda-rdkit/rdkit/rddepictor.patch'
> patching file Code/GraphMol/Depictor/RDDepictor.cpp
> Hunk #1 FAILED at 133.
> 1 out of 1 hunk FAILED -- saving rejects to file
> Code/GraphMol/Depictor/RDDepictor.cpp.rej
> Warning: failed to download source. If building, will try again after
> downloading recipe dependencies.
> Error was:
> Command '['/usr/bin/patch', '-p0', '-i',
> '/home/pahl/dev/github/conda-rdkit/rdkit/rddepictor.patch']' returned
> non-zero exit status 1
> An unexpected error has occurred, please consider sending the
> following traceback to the conda GitHub issue tracker at:
>
> https://github.com/conda/conda-build/issues
>
> Include the output of the command 'conda info' in your report.
>
>
> Traceback (most recent call last):
> File "/home/pahl/anaconda3/bin/conda-build", line 5, in <module>
> sys.exit(main())
> File
>
> "/home/pahl/anaconda3/lib/python3.5/site-packages/conda_build/main_build.py",
> line 140, in main
> args_func(args, p)
> File
>
> "/home/pahl/anaconda3/lib/python3.5/site-packages/conda_build/main_build.py",
> line 380, in args_func
> args.func(args, p)
> File
>
> "/home/pahl/anaconda3/lib/python3.5/site-packages/conda_build/main_build.py",
> line 327, in execute
> dirty=args.dirty)
> File
> "/home/pahl/anaconda3/lib/python3.5/site-packages/conda_build/build.py",
> line 487, in build
> assert not need_source_download, "Source download failed. Please
> investigate."
> AssertionError: Source download failed. Please investigate.
>
>
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