Hello RDKit Forum,
I've been using RDkit to several years through KNIME and have found it
thoroughly useful. I've taken the next step and decided to try the Postgres
Cartridge, but I've had issues building RDKit on Windows.
Has anyone encountered had success using Anaconda3 to build RDKit? I get
this message - which I've not found sufficient answers for from the conda
github:
Directory of C:\NovaData\Software\RDKit\conda-rdkit-master
28/11/2016 20:48 <DIR> .
28/11/2016 20:48 <DIR> ..
28/11/2016 05:45 3 .gitignore
28/11/2016 05:45 <DIR> boost
28/11/2016 05:45 <DIR> cairocffi
28/11/2016 05:45 <DIR> cairo_nox
28/11/2016 05:45 <DIR> django-rdkit
28/11/2016 05:45 2,626 Dockerfile
28/11/2016 05:45 <DIR> eigen
28/11/2016 05:45 <DIR> ncurses
28/11/2016 05:45 <DIR> nox
28/11/2016 05:45 <DIR> pixman
28/11/2016 05:45 <DIR> postgresql
28/11/2016 05:45 <DIR> postgresql95
28/11/2016 05:45 <DIR> rdkit
28/11/2016 05:45 <DIR> rdkit-postgresql
28/11/2016 05:45 <DIR> rdkit-postgresql95
28/11/2016 05:45 6,626 README.rst
3 File(s) 9,255 bytes
15 Dir(s) 360,784,285,696 bytes free
C:\NovaData\Software\RDKit\conda-rdkit-master>conda build boost
BUILD START: boost-1.59.0-py35_3
updating index in: C:\Users\NovaData\conda-bld\win-64
updating index in: C:\Users\NovaData\conda-bld\noarch
The following packages will be downloaded:
package | build
---------------------------|-----------------
pip-9.0.1 | py35_0 1.7 MB
The following NEW packages will be INSTALLED:
bzip2: 1.0.6-vc14_3 [vc14] (copy)
pip: 9.0.1-py35_0
python: 3.5.2-0 (copy)
setuptools: 27.2.0-py35_1 (copy)
vs2015_runtime: 14.0.25123-0 (copy)
wheel: 0.29.0-py35_0 (copy)
zlib: 1.2.8-vc14_3 [vc14] (copy)
WARNING conda.lock:touch(53): Failed to create lock, do not run conda in
parallel processes [errno 13]
Traceback (most recent call last):
File "C:\Program Files\Anaconda3\Scripts\conda-build-script.py", line 5,
in <module>
sys.exit(conda_build.cli.main_build.main())
File "C:\Program
Files\Anaconda3\lib\site-packages\conda_build\cli\main_build.py", line 246,
in main
execute(sys.argv[1:])
File "C:\Program
Files\Anaconda3\lib\site-packages\conda_build\cli\main_build.py", line 238,
in execute
already_built=None, config=config)
File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\api.py",
line 83, in build
need_source_download=need_source_download, config=config)
File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\build.py",
line 1004, in build_tree
config=recipe_config)
File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\build.py",
line 561, in build
create_env(config.build_prefix, specs, config=config)
File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\build.py",
line 431, in create_env
plan.execute_actions(actions, index, verbose=config.debug)
File "C:\Program Files\Anaconda3\lib\site-packages\conda\plan.py", line
643, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "C:\Program Files\Anaconda3\lib\site-packages\conda\instructions.py",
line 134, in execute_instructions
cmd(state, arg)
File "C:\Program Files\Anaconda3\lib\site-packages\conda\instructions.py",
line 58, in EXTRACT_CMD
extract(arg)
File "C:\Program Files\Anaconda3\lib\site-packages\conda\install.py", line
801, in extract
t.extractall(path=temp_path)
File "C:\Program Files\Anaconda3\lib\tarfile.py", line 1996, in extractall
numeric_owner=numeric_owner)
File "C:\Program Files\Anaconda3\lib\tarfile.py", line 2038, in extract
numeric_owner=numeric_owner)
File "C:\Program Files\Anaconda3\lib\tarfile.py", line 2100, in
_extract_member
os.makedirs(upperdirs)
File "C:\Program Files\Anaconda3\lib\os.py", line 231, in makedirs
makedirs(head, mode, exist_ok)
File "C:\Program Files\Anaconda3\lib\os.py", line 241, in makedirs
mkdir(name, mode)
PermissionError: [WinError 5] Access is denied: 'C:\\Program
Files\\Anaconda3\\pkgs\\vs2015_runtime-14.0.25123-0.tmp'
I'm using Anaconda3 on Windows 10.
Thanks for your help !
./mike
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