Dear all,

would it be possible to make RDKit package not depend on mkl (probably via 
numpy, pandas) and that it accepts pre-installed numpy and pandas for example 
from pip as sufficient?

The background to this is simple. Intel MKL cripples performance on any AMD 
bases processor (4-5 times slower, SSE vs AVX2). Since these AMD CPUs are now 
actually competitive again, this poses an issue. On Linux it's simple to just 
link to openblas and it works as far as I can tell just fine.

On Windows the issue is that some tools for example scipy and pandas are only 
available as openblas builds via pypi (pip). I'm not sure where the issue is 
but when I then want to install rdkit into such an environment it doesn't 
"accept" the preinstalled numpy and pandas from pip and wants to install the 
conda version based on mkl again maybe due to the package dependencies.

Can this be changed so that when installing rdkit it accepts numpy and pandas 
install from pypi?

thanks for any help.

Best regards,

Thomas



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