I'm trying to understand how to set the rdkit.do_chiral_sss in Java. I would like to call RD Kit structure search from a Java application. However the way RD Kit depends upon setting some values in Postgresql via SET seems to be hard to do using JDBC. I am using JBoss Wildfly to host the application. The normal way to set up the database connection is via JNDI.
It is not clear how to set the rdkit.do_chiral_sss variable for the search via JDBC. This does not work Context initCtx = new InitialContext(); ds = (DataSource) initCtx.lookup("java:/jdbc/rdkit-sss"); if (ds instanceof BaseDataSource) { // never true BaseDataSource bds = (BaseDataSource)ds; bds.setProperty("rdkit.do_chiral_sss", structureSearchRequest.isStereoSearch()? "true" : "false"); } else { logger.error("Cannot set RD Kit session variables"); } This message and any attachment are confidential and may be privileged or otherwise protected from disclosure. If you are not the intended recipient, you must not copy this message or attachment or disclose the contents to any other person. If you have received this transmission in error, please notify the sender immediately and delete the message and any attachment from your system. Merck KGaA, Darmstadt, Germany and any of its subsidiaries do not accept liability for any omissions or errors in this message which may arise as a result of E-Mail-transmission or for damages resulting from any unauthorized changes of the content of this message and any attachment thereto. Merck KGaA, Darmstadt, Germany and any of its subsidiaries do not guarantee that this message is free of viruses and does not accept liability for any damages caused by any virus transmitted therewith. Click http://www.merckgroup.com/disclaimer to access the German, French, Spanish and Portuguese versions of this disclaimer.
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