Hi all,
I am using rdkit_pypi==2021.9.4 to generate visualisation of compounds with
their atomic hydrogen bond strengths. In particular, I am using this
function to produce an SVG string:
d2d = rdMolDraw2D.MolDraw2DSVG(fig_size[0], fig_size[1])
d2d.drawOptions().annotationFontScale = 0.7
d2d.DrawMolecule(
rwmol,
highlightAtoms=atoms_to_highlight,
highlightAtomColors=idx2rgb,
highlightBonds=None,
)
d2d.FinishDrawing()
return d2d.GetDrawingText()
Note that I am increasing the font scale to from 0.5 to 0.7 and for certain
molecules that produces renderings where annotations are cut out:
[image: image.png]
Any suggestions on how to fix this?
Thanks,
Giammy
--
*Gianmarco*
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