Hi Giammy, I’d be pretty disappointed if that happened in 2022.03.[12]. I don’t think there’s a fix for that in 2021.09. If it still happens in the latest version please file it as a bug and I’ll take a look at it. The molecule rendering was completely overhauled over the winter to try and prevent that sort of thing.
Regards, Dave On Wed, 4 May 2022 at 16:20, Gianmarco Ghiandoni <ghiandon...@gmail.com> wrote: > Hi all, > > I am using rdkit_pypi==2021.9.4 to generate visualisation of compounds > with their atomic hydrogen bond strengths. In particular, I am using this > function to produce an SVG string: > > d2d = rdMolDraw2D.MolDraw2DSVG(fig_size[0], fig_size[1]) > d2d.drawOptions().annotationFontScale = 0.7 > d2d.DrawMolecule( > rwmol, > highlightAtoms=atoms_to_highlight, > highlightAtomColors=idx2rgb, > highlightBonds=None, > ) > d2d.FinishDrawing() > return d2d.GetDrawingText() > > Note that I am increasing the font scale to from 0.5 to 0.7 and for > certain molecules that produces renderings where annotations are cut out: > > [image: image.png] > > Any suggestions on how to fix this? > > Thanks, > > Giammy > -- > *Gianmarco* > _______________________________________________ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss > -- David Cosgrove Freelance computational chemistry and chemoinformatics developer http://cozchemix.co.uk
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