URL:
<http://gna.org/bugs/?21080>
Summary: Bug in cluster GUI for when loading previous
directory with results.
Project: relax
Submitted by: tlinnet
Submitted on: Thu 29 Aug 2013 10:28:27 AM GMT
Category: relax's source code
Severity: 3 - Normal
Priority: 5 - Normal
Status: None
Privacy: Public
Assigned to: None
Originator Name:
Originator Email:
Open/Closed: Open
Discussion Lock: Any
Release: Branches
Operating System: GNU/Linux
_______________________________________________________
Details:
Bug in cluster GUI
There is something wrong with the string control for pointing to
the directory with the previous directory with results.
State file, full log file, previous data folder provided.
To reproduce:
1) Start relax in GUI: relax_disp -g
2) Open state: ini_setup_cluster.bz2
3) Ctrl+d , right click "base pipe" and "Associate with a new auto-analysis"
4) Close pipe viewer
5) Point "results directory" to new folder "Temp"
6) Point "Previos run directory" to folder "model_sel_analyt"
7) Set models to: ['R2eff', 'No Rex', 'CR72']
8) 10 Monte Carlo:
Execute
------------- LOG ---------------------
----------------------
- The 'No Rex' model -
----------------------
relax> pipe.copy(pipe_from='base pipe', pipe_to='No Rex',
bundle_to='relax_disp')
relax> pipe.switch(pipe_name='No Rex')
relax> relax_disp.select_model(model='No Rex')
The model for no chemical exchange relaxation.
relax> value.copy(pipe_from='R2eff', pipe_to='No Rex', param='r2eff')
relax> pipe.create(pipe_name='pre', pipe_type='relax_disp', bundle=None)
relax> results.read(file='results',
dir=u'/net/tomat/home/tlinnet/kte/acbp/acbp_cpmg_disp_04MGuHCl_40C_041223_RELAX.fid/relax_reprocess/model_sel_analyt/No
Rex')
Exception raised in thread.
Traceback (most recent call last):
File "/sbinlab2/software/NMR-relax/relax_disp/gui/analyses/execute.py", line
87, in run
self.run_analysis()
File
"/sbinlab2/software/NMR-relax/relax_disp/gui/analyses/auto_relax_disp.py",
line 600, in run_analysis
Relax_disp(pipe_name=self.data.pipe_name,
pipe_bundle=self.data.pipe_bundle, results_dir=self.data.save_dir,
models=self.data.models, grid_inc=self.data.inc,
mc_sim_num=self.data.mc_sim_num, pre_run_dir=self.data.pre_run_dir,
mc_sim_all_models=self.data.mc_sim_all_models)
File "/sbinlab2/software/NMR-relax/relax_disp/auto_analyses/relax_disp.py",
line 107, in __init__
self.run()
File "/sbinlab2/software/NMR-relax/relax_disp/auto_analyses/relax_disp.py",
line 320, in run
self.optimise(model=model)
File "/sbinlab2/software/NMR-relax/relax_disp/auto_analyses/relax_disp.py",
line 220, in optimise
self.pre_run_parameters(model=model)
File "/sbinlab2/software/NMR-relax/relax_disp/auto_analyses/relax_disp.py",
line 255, in pre_run_parameters
self.interpreter.results.read(file='results', dir=path)
File "/sbinlab2/software/NMR-relax/relax_disp/prompt/uf_objects.py", line
200, in __call__
lib.arg_check.is_str(value, desc_short, can_be_none=can_be_none)
File "/sbinlab2/software/NMR-relax/relax_disp/lib/arg_check.py", line 864,
in is_str
raise RelaxNoneStrError(name, arg)
RelaxNoneStrError: RelaxError: The directory name argument
'/net/tomat/home/tlinnet/kte/acbp/acbp_cpmg_disp_04MGuHCl_40C_041223_RELAX.fid/relax_reprocess/model_sel_analyt/No
Rex' must be either None, or a string.
_______________________________________________________
File Attachments:
-------------------------------------------------------
Date: Thu 29 Aug 2013 10:28:27 AM GMT Name: GUI_cluster_bug.txt Size: 14kB
By: tlinnet
<http://gna.org/bugs/download.php?file_id=18790>
-------------------------------------------------------
Date: Thu 29 Aug 2013 10:28:27 AM GMT Name: ini_setup_cluster.bz2 Size: 24kB
By: tlinnet
<http://gna.org/bugs/download.php?file_id=18791>
_______________________________________________________
Reply to this item at:
<http://gna.org/bugs/?21080>
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