I will try! Best Troels
2014-09-04 11:24 GMT+02:00 Edward d'Auvergne <[email protected]>: > Hi Troels, > > Again for preparing the release notes (e.g. > http://wiki.nmr-relax.com/Relax_3.3.0#CHANGES_file), could you prepare > the commit message as follows: > > - The 'task', 'bug', or 'sr' reference on its own line should be > capitalised. This is so it makes a proper sentence in the release > notes, and I don't have to change it manually later (you have a lot of > these). > > - Please add a space before the bracket. For example "task > #7826(https://gna.org/task/index.php?7826)" should be "Task #7826 > (https://gna.org/task/index.php?7826)". This is one I spend a lot of > time changing for the notes. > > - The software Python always starts with a capital 'P'. Software > names are strange in that way. For example PyMOL, MOLMOL, xmGrace, > nmrPipe, showApod, relax, etc. > > If you could remember these rules for your next commit messages, you > would really be helping me a lot! > > Cheers! > > Edward > > > On 3 September 2014 22:50, <[email protected]> wrote: >> Author: tlinnet >> Date: Wed Sep 3 22:50:44 2014 >> New Revision: 25608 >> >> URL: http://svn.gna.org/viewcvs/relax?rev=25608&view=rev >> Log: >> Systemtest added for checking the writing of 'Noise Std Dev' from showApod >> to file. >> >> task #7826(https://gna.org/task/index.php?7826): Write an python class for >> the repeated analysis of dispersion data. >> >> Modified: >> trunk/test_suite/system_tests/relax_disp.py >> >> Modified: trunk/test_suite/system_tests/relax_disp.py >> URL: >> http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/relax_disp.py?rev=25608&r1=25607&r2=25608&view=diff >> ============================================================================== >> --- trunk/test_suite/system_tests/relax_disp.py (original) >> +++ trunk/test_suite/system_tests/relax_disp.py Wed Sep 3 22:50:44 2014 >> @@ -35,8 +35,8 @@ >> from data_store import Relax_data_store; ds = Relax_data_store() >> import dep_check >> from lib.errors import RelaxError >> -from lib.io import get_file_path >> -from lib.spectrum.nmrpipe import show_apod_extract, show_apod_rmsd >> +from lib.io import extract_data, get_file_path >> +from lib.spectrum.nmrpipe import show_apod_extract, show_apod_rmsd, >> show_apod_rmsd_to_file >> from pipe_control.mol_res_spin import generate_spin_string, return_spin, >> spin_loop >> from pipe_control.minimise import assemble_scaling_matrix >> from specific_analyses.relax_disp.checks import check_missing_r1 >> @@ -112,7 +112,8 @@ >> # The list of tests to skip. >> to_skip = [ >> "test_show_apod_extract", >> - "test_show_apod_rmsd" >> + "test_show_apod_rmsd", >> + "test_show_apod_rmsd_to_file" >> ] >> >> # Store in the status object. >> @@ -6754,6 +6755,28 @@ >> self.assertEqual(rmsd, 8583.41) >> >> >> + def test_show_apod_rmsd_to_file(self): >> + """Test getting the spectrum noise for spectrum fourier transformed >> with NMRPipe, and tool showApod, and write to file.""" >> + >> + # The path to the data files. >> + data_path = status.install_path + >> sep+'test_suite'+sep+'shared_data'+sep+'dispersion'+sep+'repeated_analysis'+sep+'SOD1'+sep+'cpmg_disp_sod1d90a_060518'+sep+'cpmg_disp_sod1d90a_060518_normal.fid'+sep+'ft2_data' >> + >> + # Define file name. >> + file_name = '128_0_FT.ft2' >> + >> + # Call function, and get file name. >> + wfile_path = show_apod_rmsd_to_file(file_name=file_name, >> dir=data_path, outdir=self.tmpdir) >> + >> + # Open the file. >> + get_data = extract_data(file=wfile_path) >> + >> + # Extract line 0, column 0. >> + test = float(get_data[0][0]) >> + >> + # Assert. >> + self.assertEqual(test, 8583.41) >> + >> + >> def test_sod1wt_t25_bug_21954_order_error_analysis(self): >> """Error analysis of SOD1-WT CPMG. From paper at >> U{http://dx.doi.org/10.1073/pnas.0907387106}. >> >> >> >> _______________________________________________ >> relax (http://www.nmr-relax.com) >> >> This is the relax-commits mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-commits > > _______________________________________________ > relax (http://www.nmr-relax.com) > > This is the relax-devel mailing list > [email protected] > > To unsubscribe from this list, get a password > reminder, or change your subscription options, > visit the list information page at > https://mail.gna.org/listinfo/relax-devel _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
