Thanks! Regards,
Edward On 4 September 2014 11:29, Troels Emtekær Linnet <[email protected]> wrote: > I will try! > > Best > Troels > > 2014-09-04 11:24 GMT+02:00 Edward d'Auvergne <[email protected]>: >> Hi Troels, >> >> Again for preparing the release notes (e.g. >> http://wiki.nmr-relax.com/Relax_3.3.0#CHANGES_file), could you prepare >> the commit message as follows: >> >> - The 'task', 'bug', or 'sr' reference on its own line should be >> capitalised. This is so it makes a proper sentence in the release >> notes, and I don't have to change it manually later (you have a lot of >> these). >> >> - Please add a space before the bracket. For example "task >> #7826(https://gna.org/task/index.php?7826)" should be "Task #7826 >> (https://gna.org/task/index.php?7826)". This is one I spend a lot of >> time changing for the notes. >> >> - The software Python always starts with a capital 'P'. Software >> names are strange in that way. For example PyMOL, MOLMOL, xmGrace, >> nmrPipe, showApod, relax, etc. >> >> If you could remember these rules for your next commit messages, you >> would really be helping me a lot! >> >> Cheers! >> >> Edward >> >> >> On 3 September 2014 22:50, <[email protected]> wrote: >>> Author: tlinnet >>> Date: Wed Sep 3 22:50:44 2014 >>> New Revision: 25608 >>> >>> URL: http://svn.gna.org/viewcvs/relax?rev=25608&view=rev >>> Log: >>> Systemtest added for checking the writing of 'Noise Std Dev' from showApod >>> to file. >>> >>> task #7826(https://gna.org/task/index.php?7826): Write an python class for >>> the repeated analysis of dispersion data. >>> >>> Modified: >>> trunk/test_suite/system_tests/relax_disp.py >>> >>> Modified: trunk/test_suite/system_tests/relax_disp.py >>> URL: >>> http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/relax_disp.py?rev=25608&r1=25607&r2=25608&view=diff >>> ============================================================================== >>> --- trunk/test_suite/system_tests/relax_disp.py (original) >>> +++ trunk/test_suite/system_tests/relax_disp.py Wed Sep 3 22:50:44 2014 >>> @@ -35,8 +35,8 @@ >>> from data_store import Relax_data_store; ds = Relax_data_store() >>> import dep_check >>> from lib.errors import RelaxError >>> -from lib.io import get_file_path >>> -from lib.spectrum.nmrpipe import show_apod_extract, show_apod_rmsd >>> +from lib.io import extract_data, get_file_path >>> +from lib.spectrum.nmrpipe import show_apod_extract, show_apod_rmsd, >>> show_apod_rmsd_to_file >>> from pipe_control.mol_res_spin import generate_spin_string, return_spin, >>> spin_loop >>> from pipe_control.minimise import assemble_scaling_matrix >>> from specific_analyses.relax_disp.checks import check_missing_r1 >>> @@ -112,7 +112,8 @@ >>> # The list of tests to skip. >>> to_skip = [ >>> "test_show_apod_extract", >>> - "test_show_apod_rmsd" >>> + "test_show_apod_rmsd", >>> + "test_show_apod_rmsd_to_file" >>> ] >>> >>> # Store in the status object. >>> @@ -6754,6 +6755,28 @@ >>> self.assertEqual(rmsd, 8583.41) >>> >>> >>> + def test_show_apod_rmsd_to_file(self): >>> + """Test getting the spectrum noise for spectrum fourier >>> transformed with NMRPipe, and tool showApod, and write to file.""" >>> + >>> + # The path to the data files. >>> + data_path = status.install_path + >>> sep+'test_suite'+sep+'shared_data'+sep+'dispersion'+sep+'repeated_analysis'+sep+'SOD1'+sep+'cpmg_disp_sod1d90a_060518'+sep+'cpmg_disp_sod1d90a_060518_normal.fid'+sep+'ft2_data' >>> + >>> + # Define file name. >>> + file_name = '128_0_FT.ft2' >>> + >>> + # Call function, and get file name. >>> + wfile_path = show_apod_rmsd_to_file(file_name=file_name, >>> dir=data_path, outdir=self.tmpdir) >>> + >>> + # Open the file. >>> + get_data = extract_data(file=wfile_path) >>> + >>> + # Extract line 0, column 0. >>> + test = float(get_data[0][0]) >>> + >>> + # Assert. >>> + self.assertEqual(test, 8583.41) >>> + >>> + >>> def test_sod1wt_t25_bug_21954_order_error_analysis(self): >>> """Error analysis of SOD1-WT CPMG. From paper at >>> U{http://dx.doi.org/10.1073/pnas.0907387106}. >>> >>> >>> >>> _______________________________________________ >>> relax (http://www.nmr-relax.com) >>> >>> This is the relax-commits mailing list >>> [email protected] >>> >>> To unsubscribe from this list, get a password >>> reminder, or change your subscription options, >>> visit the list information page at >>> https://mail.gna.org/listinfo/relax-commits >> >> _______________________________________________ >> relax (http://www.nmr-relax.com) >> >> This is the relax-devel mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-devel _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
