Monges, cade o erro???

#!/usr/bin/env perl

use strict;
use autodie;

open my $in, "<", $ARGV[0];
my $contig = 0;
while (my $line = <$in>){
    my $ctg = "contig" . $contig;
    #print $line;
    if ($line =~ /<(.+)/){
        print "Ok\n";
        $line = s/$1/$ctg/;
        print $line;
        $contig++;
    }
}

O arquivo é algo como
>blablabla
ACTGAACAGTAGCTACTGACTCGTACGCTCGTAGC
>lalalala
CAGCTGATCGATCGTAGCATGCTACG
                                          
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