Is the libpython in /usr/lib being picked up instead of the new one at runtime? can you put this aside and try again?
2008/11/15 Paul Geeleher <[EMAIL PROTECTED]>: > Hi again, > > Building version 2.5.2 of Python from source (overwriting version > 2.5.1) seems to have solved that problem alright. Rpy now seems to install, > but when I go to import it I'm faced witht he following error: > > > >>>> from rpy import * > Traceback (most recent call last): > File "<stdin>", line 1, in <module> > File "/usr/local/lib/python2.5/site-packages/rpy.py", line 134, in > <module> > """ % RVERSION) > RuntimeError: /usr/local/lib/python2.5/site-packages/_rpy2062.so: undefined > symbol: PyUnicodeUCS4_AsASCIIString > > RPy module can not be imported. Please check if your rpy > installation supports R 2.6.2. If you have multiple R versions > installed, you may need to set RHOME before importing rpy. For > example: > > >>> from rpy_options import set_options > >>> set_options(RHOME='c:/progra~1/r/rw2011/') > >>> from rpy import * > > > > Any ideas here would be greatly appreciated. > > Thanks, > > -Paul. > > > > > > > > > > > > > > > On 11/14/08, Paul Geeleher <[EMAIL PROTECTED]> wrote: >> >> Thanks for the response Laurent. I'll give it a go and let you know how it >> works out. >> >> -Paul. >> >> On Fri, Nov 14, 2008 at 7:18 PM, laurent oget <[EMAIL PROTECTED]> wrote: >>> >>> This definitely looks weird. I have built rpy and rpy2 on 64-bit >>> linux, but this was always using a python i built before, since the >>> machine i am using come with an antiquated python in the distribution. >>> I just looked at one of those machine and I noticed my hand-built >>> python does not have a libpython.so but only a libpython.a . >>> >>> Now that i think about it i am not sure you can use a stripped library >>> to link against. how would the linker know the address of those >>> symbols in this library? >>> >>> In any case building your own python might be a workaround... >>> >>> Laurent >>> >>> >>> >>> >>> >>> 2008/11/14 Paul Geeleher <[EMAIL PROTECTED]>: >>> > Hi >>> > >>> > I posted this message about 10 days ago and I didn't get a reply, so >>> > I'm >>> > going to chance re-posting, hopefully somebody can help me out because >>> > I >>> > still haven't managed to fix it... >>> > >>> > _______________ >>> > >>> > >>> > Hi all, >>> > >>> > I'm trying to install Rpy on a 64 bit Suse Enterprise Edition Server. >>> > I'm >>> > running R version 2.6.2 and python version 2.5.1 and Rpy 1.0.3. I've >>> > set up >>> > the path >>> > to the R library by creating a link to libR.so and running ldconfig. >>> > I've got the python-devel package installed. I'm getting the following >>> > error when I run "python setup.py install" >>> > >>> > >>> > RHOMES= [] >>> > DEBUG= True >>> > Setting RHOMES to ['/usr/local/lib64/R'] >>> > ### Using R verion 2.6.2 installed at /usr/local/lib64/R ### >>> > RHOME= /usr/local/lib64/R >>> > copying src/rpymodule.c -> src/rpymodule2062.c >>> > copying src/R_eval.c -> src/R_eval2062.c >>> > copying src/io.c -> src/io2062.c >>> > running install >>> > running build >>> > running build_py >>> > running build_ext >>> > building '_rpy2062' extension >>> > gcc -pthread -shared build/temp.linux-x86_64-2.5/src/rpymodule2062.o >>> > build/temp.linux-x86_64-2.5/src/R_eval2062.o >>> > build/temp.linux-x86_64-2.5/src/io2062.o >>> > build/temp.linux-x86_64-2.5/src/setenv.o -L/usr/local/lib64/R/bin >>> > -L/usr/local/lib64/R/lib -L/usr/lib64 -Wl,-R/usr/local/lib64/R/bin >>> > -Wl,-R/usr/local/lib64/R/lib -lR -lRlapack -lpython2.5 -o >>> > build/lib.linux-x86_64-2.5/_rpy2062.so >>> > /usr/lib64/libpython2.5.so: file not recognized: File format not >>> > recognized >>> > collect2: ld returned 1 exit status >>> > error: command 'gcc' failed with exit status 1 >>> > >>> > ------------------------------------ >>> > >>> > So the file libpython2.5.so seems to be throwing up some kind of a >>> > problem. >>> > >>> > The output of 'file libpython2.5.so' is: >>> > "libpython2.5.so: symbolic link to `libpython2.5.so.1.0'" >>> > >>> > So its a link and the output of 'file libpython2.5.so.1.0' is: >>> > "libpython2.5.so.1.0: ELF 64-bit LSB shared object, AMD x86-64, version >>> > 1 >>> > (SYSV), stripped" >>> > >>> > >>> > >>> > Any ideas here guys? (please!) >>> > >>> > -Paul. >>> > >>> >>> > >>> > ------------------------------------------------------------------------- >>> > This SF.Net email is sponsored by the Moblin Your Move Developer's >>> > challenge >>> > Build the coolest Linux based applications with Moblin SDK & win great >>> > prizes >>> > Grand prize is a trip for two to an Open Source event anywhere in the >>> > world >>> > http://moblin-contest.org/redirect.php?banner_id=100&url=/ >>> > _______________________________________________ >>> > rpy-list mailing list >>> > rpy-list@lists.sourceforge.net >>> > https://lists.sourceforge.net/lists/listinfo/rpy-list >>> > >>> > >>> >>> ------------------------------------------------------------------------- >>> This SF.Net email is sponsored by the Moblin Your Move Developer's >>> challenge >>> Build the coolest Linux based applications with Moblin SDK & win great >>> prizes >>> Grand prize is a trip for two to an Open Source event anywhere in the >>> world >>> http://moblin-contest.org/redirect.php?banner_id=100&url=/ >>> _______________________________________________ >>> rpy-list mailing list >>> rpy-list@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/rpy-list >> >> >> >> -- >> Paul Geeleher >> Department of Mathematics >> National University of Ireland >> Galway >> Ireland >> > > > > -- > Paul Geeleher > Department of Mathematics > National University of Ireland > Galway > Ireland > > ------------------------------------------------------------------------- > This SF.Net email is sponsored by the Moblin Your Move Developer's challenge > Build the coolest Linux based applications with Moblin SDK & win great > prizes > Grand prize is a trip for two to an Open Source event anywhere in the world > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > _______________________________________________ > rpy-list mailing list > rpy-list@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rpy-list > > ------------------------------------------------------------------------- This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ _______________________________________________ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-list
