One question i forgot to ask: -which python are you importing into? Laurent
2008/11/16 Paul Geeleher <[EMAIL PROTECTED]>: > Hi again. > > I did a "find / -name "*libpython*"" which should find any libpython files > (I think). It outputted the following. > > /usr/lib/libpython2.4.so.1.0 > /usr/lib64/libpython2.5.so > /usr/lib64/libpython2.5.so.1.0 > /usr/lib64/gnome-vfs-2.0/modules/libpythonmethod.so > /usr/lib64/python2.5/config/libpython2.5.a > /usr/local/lib/python2.5/config/libpython2.5.a > /root/Python-2.5.2/Doc/lib/libpython.tex > /root/Python-2.5.2/libpython2.5.a > > > I tried renaming (to pylib.bak) both "/usr/lib/libpython2.4.so.1.0" and > "/usr/lib64/libpython2.5.so" and reinstalling and running rpy after each > time, but to no avail. > > I wonder is there any way to manually specify the libpython, if that is in > fact definately the problem? > > > > If this is any help, this is the output when Rpy installs: > > > hcux321:~/rpy-1.0.3 # python setup.py install > RHOMES= [] > DEBUG= True > Setting RHOMES to ['/usr/local/lib64/R'] > ### Using R verion 2.6.2 installed at /usr/local/lib64/R ### > RHOME= /usr/local/lib64/R > copying src/rpymodule.c -> src/rpymodule2062.c > copying src/R_eval.c -> src/R_eval2062.c > copying src/io.c -> src/io2062.c > running install > running build > running build_py > running build_ext > running install_lib > running install_egg_info > Removing /usr/local/lib/python2.5/site-packages/rpy-1.0.3-py2.5.egg-info > Writing /usr/local/lib/python2.5/site-packages/rpy-1.0.3-py2.5.egg-info > > > > -Paul > > > On Sun, Nov 16, 2008 at 5:30 PM, laurent oget <[EMAIL PROTECTED]> wrote: >> >> Is the libpython in /usr/lib being picked up instead of the new one at >> runtime? can you put this aside and try again? >> >> 2008/11/15 Paul Geeleher <[EMAIL PROTECTED]>: >> > Hi again, >> > >> > Building version 2.5.2 of Python from source (overwriting version >> > 2.5.1) seems to have solved that problem alright. Rpy now seems to >> > install, >> > but when I go to import it I'm faced witht he following error: >> > >> > >> > >> >>>> from rpy import * >> > Traceback (most recent call last): >> > File "<stdin>", line 1, in <module> >> > File "/usr/local/lib/python2.5/site-packages/rpy.py", line 134, in >> > <module> >> > """ % RVERSION) >> > RuntimeError: /usr/local/lib/python2.5/site-packages/_rpy2062.so: >> > undefined >> > symbol: PyUnicodeUCS4_AsASCIIString >> > >> > RPy module can not be imported. Please check if your rpy >> > installation supports R 2.6.2. If you have multiple R versions >> > installed, you may need to set RHOME before importing rpy. For >> > example: >> > >> > >>> from rpy_options import set_options >> > >>> set_options(RHOME='c:/progra~1/r/rw2011/') >> > >>> from rpy import * >> > >> > >> > >> > Any ideas here would be greatly appreciated. >> > >> > Thanks, >> > >> > -Paul. >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > On 11/14/08, Paul Geeleher <[EMAIL PROTECTED]> wrote: >> >> >> >> Thanks for the response Laurent. I'll give it a go and let you know how >> >> it >> >> works out. >> >> >> >> -Paul. >> >> >> >> On Fri, Nov 14, 2008 at 7:18 PM, laurent oget <[EMAIL PROTECTED]> wrote: >> >>> >> >>> This definitely looks weird. I have built rpy and rpy2 on 64-bit >> >>> linux, but this was always using a python i built before, since the >> >>> machine i am using come with an antiquated python in the distribution. >> >>> I just looked at one of those machine and I noticed my hand-built >> >>> python does not have a libpython.so but only a libpython.a . >> >>> >> >>> Now that i think about it i am not sure you can use a stripped library >> >>> to link against. how would the linker know the address of those >> >>> symbols in this library? >> >>> >> >>> In any case building your own python might be a workaround... >> >>> >> >>> Laurent >> >>> >> >>> >> >>> >> >>> >> >>> >> >>> 2008/11/14 Paul Geeleher <[EMAIL PROTECTED]>: >> >>> > Hi >> >>> > >> >>> > I posted this message about 10 days ago and I didn't get a reply, so >> >>> > I'm >> >>> > going to chance re-posting, hopefully somebody can help me out >> >>> > because >> >>> > I >> >>> > still haven't managed to fix it... >> >>> > >> >>> > _______________ >> >>> > >> >>> > >> >>> > Hi all, >> >>> > >> >>> > I'm trying to install Rpy on a 64 bit Suse Enterprise Edition >> >>> > Server. >> >>> > I'm >> >>> > running R version 2.6.2 and python version 2.5.1 and Rpy 1.0.3. I've >> >>> > set up >> >>> > the path >> >>> > to the R library by creating a link to libR.so and running ldconfig. >> >>> > I've got the python-devel package installed. I'm getting the >> >>> > following >> >>> > error when I run "python setup.py install" >> >>> > >> >>> > >> >>> > RHOMES= [] >> >>> > DEBUG= True >> >>> > Setting RHOMES to ['/usr/local/lib64/R'] >> >>> > ### Using R verion 2.6.2 installed at /usr/local/lib64/R ### >> >>> > RHOME= /usr/local/lib64/R >> >>> > copying src/rpymodule.c -> src/rpymodule2062.c >> >>> > copying src/R_eval.c -> src/R_eval2062.c >> >>> > copying src/io.c -> src/io2062.c >> >>> > running install >> >>> > running build >> >>> > running build_py >> >>> > running build_ext >> >>> > building '_rpy2062' extension >> >>> > gcc -pthread -shared build/temp.linux-x86_64-2.5/src/rpymodule2062.o >> >>> > build/temp.linux-x86_64-2.5/src/R_eval2062.o >> >>> > build/temp.linux-x86_64-2.5/src/io2062.o >> >>> > build/temp.linux-x86_64-2.5/src/setenv.o -L/usr/local/lib64/R/bin >> >>> > -L/usr/local/lib64/R/lib -L/usr/lib64 -Wl,-R/usr/local/lib64/R/bin >> >>> > -Wl,-R/usr/local/lib64/R/lib -lR -lRlapack -lpython2.5 -o >> >>> > build/lib.linux-x86_64-2.5/_rpy2062.so >> >>> > /usr/lib64/libpython2.5.so: file not recognized: File format not >> >>> > recognized >> >>> > collect2: ld returned 1 exit status >> >>> > error: command 'gcc' failed with exit status 1 >> >>> > >> >>> > ------------------------------------ >> >>> > >> >>> > So the file libpython2.5.so seems to be throwing up some kind of a >> >>> > problem. >> >>> > >> >>> > The output of 'file libpython2.5.so' is: >> >>> > "libpython2.5.so: symbolic link to `libpython2.5.so.1.0'" >> >>> > >> >>> > So its a link and the output of 'file libpython2.5.so.1.0' is: >> >>> > "libpython2.5.so.1.0: ELF 64-bit LSB shared object, AMD x86-64, >> >>> > version >> >>> > 1 >> >>> > (SYSV), stripped" >> >>> > >> >>> > >> >>> > >> >>> > Any ideas here guys? (please!) >> >>> > >> >>> > -Paul. >> >>> > >> >>> >> >>> > >> >>> > >> >>> > ------------------------------------------------------------------------- >> >>> > This SF.Net email is sponsored by the Moblin Your Move Developer's >> >>> > challenge >> >>> > Build the coolest Linux based applications with Moblin SDK & win >> >>> > great >> >>> > prizes >> >>> > Grand prize is a trip for two to an Open Source event anywhere in >> >>> > the >> >>> > world >> >>> > http://moblin-contest.org/redirect.php?banner_id=100&url=/ >> >>> > _______________________________________________ >> >>> > rpy-list mailing list >> >>> > rpy-list@lists.sourceforge.net >> >>> > https://lists.sourceforge.net/lists/listinfo/rpy-list >> >>> > >> >>> > >> >>> >> >>> >> >>> ------------------------------------------------------------------------- >> >>> This SF.Net email is sponsored by the Moblin Your Move Developer's >> >>> challenge >> >>> Build the coolest Linux based applications with Moblin SDK & win great >> >>> prizes >> >>> Grand prize is a trip for two to an Open Source event anywhere in the >> >>> world >> >>> http://moblin-contest.org/redirect.php?banner_id=100&url=/ >> >>> _______________________________________________ >> >>> rpy-list mailing list >> >>> rpy-list@lists.sourceforge.net >> >>> https://lists.sourceforge.net/lists/listinfo/rpy-list >> >> >> >> >> >> >> >> -- >> >> Paul Geeleher >> >> Department of Mathematics >> >> National University of Ireland >> >> Galway >> >> Ireland >> >> >> > >> > >> > >> > -- >> > Paul Geeleher >> > Department of Mathematics >> > National University of Ireland >> > Galway >> > Ireland >> > >> > >> > ------------------------------------------------------------------------- >> > This SF.Net email is sponsored by the Moblin Your Move Developer's >> > challenge >> > Build the coolest Linux based applications with Moblin SDK & win great >> > prizes >> > Grand prize is a trip for two to an Open Source event anywhere in the >> > world >> > http://moblin-contest.org/redirect.php?banner_id=100&url=/ >> > _______________________________________________ >> > rpy-list mailing list >> > rpy-list@lists.sourceforge.net >> > https://lists.sourceforge.net/lists/listinfo/rpy-list >> > >> > >> >> ------------------------------------------------------------------------- >> This SF.Net email is sponsored by the Moblin Your Move Developer's >> challenge >> Build the coolest Linux based applications with Moblin SDK & win great >> prizes >> Grand prize is a trip for two to an Open Source event anywhere in the >> world >> http://moblin-contest.org/redirect.php?banner_id=100&url=/ >> _______________________________________________ >> rpy-list mailing list >> rpy-list@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/rpy-list > > > > -- > Paul Geeleher > Department of Mathematics > National University of Ireland > Galway > Ireland > > > ------------------------------------------------------------------------- > This SF.Net email is sponsored by the Moblin Your Move Developer's challenge > Build the coolest Linux based applications with Moblin SDK & win great > prizes > Grand prize is a trip for two to an Open Source event anywhere in the world > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > _______________________________________________ > rpy-list mailing list > rpy-list@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rpy-list > > ------------------------------------------------------------------------- This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ _______________________________________________ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-list
