All will be available soon! On Wed, Dec 16, 2020 at 4:12 AM Elimboto Yohana <[email protected]> wrote:
> Hi Andrey, > > I would suggest the installation of the following libraries/software > should it be possible (most of these tools are great for animations and > visualizations): > > 1. Plotly: pip install plotly (https://pypi.org/project/plotly/) or > specify version: pip install plotly==4.14.1 > 2. SciTools: pip install scitools3 (https://pypi.org/project/scitools3/, > see also > https://code.google.com/archive/p/scitools/wikis/Installation.wiki) > > 3. Python wrapper for Gnuplot (http://www.gnuplot.info/), PyGnuplot: pip > install PyGnuplot (https://pypi.org/project/PyGnuplot/). Gnuplot can be > installed as stand-alone. You could also install Gnuplot.py: > http://gnuplot-py.sourceforge.net/ ( see demo usage here: > https://www.tssfl.com/gnuplot-py-usage-4670) > > 4. Mathematical Animation Engine, Manim: pip3 install manimlib ( > https://github.com/3b1b/manim, see also the community version > https://github.com/ManimCommunity/manim/) > > 5. Bokeh: pip install bokeh (https://pypi.org/project/bokeh/) > > 6. Gif: pip install -U gif (https://pypi.org/project/gif/) > > In addition you can install OpenCv: > https://pypi.org/project/opencv-python/ > > Kind regards, > > Elimboto > > On Tue, Dec 15, 2020 at 7:15 PM Elimboto Yohana <[email protected]> wrote: > >> Hi Andrey, >> >> How do I read the following files on Github in Sage Cell? >> >> 1. https://github.com/TSSFL/cosmo_datasets/tree/master/hdf5_data.h5 >> 2. >> https://github.com/TSSFL/cosmo_datasets/blob/main/avgmap_nside512_f1250.00MHz.fits >> >> They respectively require h5py and healpy packages to read them, so >> locally I would import the libraries and read them as follows: >> >> import h5py >> >> f1 = h5py.File('..../hdf5_data.h5', 'r') #... stands for path to the file >> >> import healpy as hp >> >> f2 = hp.fitsfunc.read_map('..../avgmap_nside512_f1250.00MHz.fits', >> field=0) >> >> I tried >> >> f1 = h5py.File(' >> https://github.com/TSSFL/cosmo_datasets/tree/master/hdf5_data.h5', 'r') >> f2 = maps = hp.fitsfunc.read_map(' >> https://github.com/TSSFL/cosmo_datasets/blob/main/avgmap_nside512_f1250.00MHz.fits', >> field=0) >> >> on Sage Cell but failed, I get some errors. >> >> Kind regards, >> >> Elimboto >> >> On Tue, Dec 15, 2020 at 4:21 AM Elimboto Yohana <[email protected]> wrote: >> >>> Pandas works great, but so far I have tested pandas with .csv data >>> files. I will test reading other data files such as .fits, .h5 and so on. >>> >>> Thank you, >>> >>> Elimboto >>> >>> On Tuesday, December 15, 2020, Andrey Novoseltsev <[email protected]> >>> wrote: >>> > You have internet access from SageCell, so you definitely can read >>> data from GitHub - as far as for interpreting and parsing them it depends >>> on what you want and need to process them. I think panda is installed, so >>> your code should work - does it not? If something else needs to be >>> installed - let me know! >>> > On Mon, Dec 14, 2020 at 12:05 PM Elimboto Yohana <[email protected]> wrote: >>> >> >>> >> Thank you, Andrey, >>> >> I will let you know If I encounter any issues. There are some >>> warnings, but they don't cause any harm so far. I also hope the available >>> dependencies suffice for current use. >>> >> >>> >> I do not know why my messages do not appear in the Google group, I >>> have actually been replying to both your email and the google group! >>> >> One thing I would like to ask, If I have some astronomical data on a >>> public repository such as GitHub, say the data is in .fits, or .h5 (HDF5) >>> formats, can the data in these file formats be read by parsing the repo >>> URL? Or how can this be done? Is there a limitation for some data formats? >>> >> >>> >> For example, using pandas we can read .csv data file on GitHub as >>> >> df = pd.read_csv(" >>> https://github.com/selva86/datasets/raw/master/mtcars.csv";) >>> >> Kind regards, >>> >> Elimboto >>> >> >>> >> >>> >> On Mon, Dec 14, 2020 at 7:37 PM Andrey Novoseltsev < >>> [email protected]> wrote: >>> >>> >>> >>> Hi Elimboto! >>> >>> If there are cases when they don't work because of some missing >>> optional dependencies, I'll be happy to install those as well! >>> >>> I am also a bit puzzled why your messages do not show up in the >>> google group - as far as I can tell you are allowed to post and there are >>> no messages in moderation. >>> >>> Best, >>> >>> Andrey >>> >>> >>> >>> -- >>> >>> You received this message because you are subscribed to the Google >>> Groups "sage-cell" group. >>> >>> To unsubscribe from this group and stop receiving emails from it, >>> send an email to [email protected]. >>> >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-cell/CAD0_dC5qDkhMuMmZj5E%3DvsHiTvnnqvq2Nw637GH8BeMWtrW_%2Bw%40mail.gmail.com >>> . >>> > >>> > -- >>> > You received this message because you are subscribed to the Google >>> Groups "sage-cell" group. >>> > To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> > To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-cell/CAD0_dC65mDrsVEyZUEf%2BNyB7q%2BUTKor0oiC9TAHbnfTGvadftg%40mail.gmail.com >>> . >>> > >> >> -- You received this message because you are subscribed to the Google Groups "sage-cell" group. 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