selenium and chart-studio are installed! On Wed, Dec 23, 2020 at 6:47 AM Elimboto Yohana <[email protected]> wrote:
> Bokeh dependence: > > However, exporting images with bokeh to formats like png, or others, > requires selenium ( > https://docs.bokeh.org/en/latest/docs/user_guide/export.html): > > pip install selenium > > Kind regards, > > Elimboto > > On Wed, Dec 23, 2020 at 12:39 PM Elimboto Yohana <[email protected]> wrote: > >> Hi Andrey, >> >> Looks like you have installed all the modules I requested, thank you so >> much. I have a request for one "Plotly" dependence -- chart-studio, which >> can be installed as >> >> pip install chart_studio >> >> The previously used module plotly.plotly is deprecated. >> >> Kind regards, >> >> Elimboto >> >> >> >> >> >> On Sun, Dec 20, 2020 at 7:10 PM Andrey Novoseltsev <[email protected]> >> wrote: >> >>> All will be available soon! >>> >>> On Wed, Dec 16, 2020 at 4:12 AM Elimboto Yohana <[email protected]> wrote: >>> >>>> Hi Andrey, >>>> >>>> I would suggest the installation of the following libraries/software >>>> should it be possible (most of these tools are great for animations and >>>> visualizations): >>>> >>>> 1. Plotly: pip install plotly (https://pypi.org/project/plotly/) or >>>> specify version: pip install plotly==4.14.1 >>>> 2. SciTools: pip install scitools3 (https://pypi.org/project/scitools3/, >>>> see also >>>> https://code.google.com/archive/p/scitools/wikis/Installation.wiki) >>>> >>>> 3. Python wrapper for Gnuplot (http://www.gnuplot.info/), PyGnuplot: >>>> pip install PyGnuplot (https://pypi.org/project/PyGnuplot/). Gnuplot >>>> can be installed as stand-alone. You could also install Gnuplot.py: >>>> http://gnuplot-py.sourceforge.net/ ( see demo usage here: >>>> https://www.tssfl.com/gnuplot-py-usage-4670) >>>> >>>> 4. Mathematical Animation Engine, Manim: pip3 install manimlib ( >>>> https://github.com/3b1b/manim, see also the community version >>>> https://github.com/ManimCommunity/manim/) >>>> >>>> 5. Bokeh: pip install bokeh (https://pypi.org/project/bokeh/) >>>> >>>> 6. Gif: pip install -U gif (https://pypi.org/project/gif/) >>>> >>>> In addition you can install OpenCv: >>>> https://pypi.org/project/opencv-python/ >>>> >>>> Kind regards, >>>> >>>> Elimboto >>>> >>>> On Tue, Dec 15, 2020 at 7:15 PM Elimboto Yohana <[email protected]> wrote: >>>> >>>>> Hi Andrey, >>>>> >>>>> How do I read the following files on Github in Sage Cell? >>>>> >>>>> 1. https://github.com/TSSFL/cosmo_datasets/tree/master/hdf5_data.h5 >>>>> 2. >>>>> https://github.com/TSSFL/cosmo_datasets/blob/main/avgmap_nside512_f1250.00MHz.fits >>>>> >>>>> They respectively require h5py and healpy packages to read them, so >>>>> locally I would import the libraries and read them as follows: >>>>> >>>>> import h5py >>>>> >>>>> f1 = h5py.File('..../hdf5_data.h5', 'r') #... stands for path to the >>>>> file >>>>> >>>>> import healpy as hp >>>>> >>>>> f2 = hp.fitsfunc.read_map('..../avgmap_nside512_f1250.00MHz.fits', >>>>> field=0) >>>>> >>>>> I tried >>>>> >>>>> f1 = h5py.File(' >>>>> https://github.com/TSSFL/cosmo_datasets/tree/master/hdf5_data.h5', >>>>> 'r') >>>>> f2 = maps = hp.fitsfunc.read_map(' >>>>> https://github.com/TSSFL/cosmo_datasets/blob/main/avgmap_nside512_f1250.00MHz.fits', >>>>> field=0) >>>>> >>>>> on Sage Cell but failed, I get some errors. >>>>> >>>>> Kind regards, >>>>> >>>>> Elimboto >>>>> >>>>> On Tue, Dec 15, 2020 at 4:21 AM Elimboto Yohana <[email protected]> wrote: >>>>> >>>>>> Pandas works great, but so far I have tested pandas with .csv data >>>>>> files. I will test reading other data files such as .fits, .h5 and so on. >>>>>> >>>>>> Thank you, >>>>>> >>>>>> Elimboto >>>>>> >>>>>> On Tuesday, December 15, 2020, Andrey Novoseltsev <[email protected]> >>>>>> wrote: >>>>>> > You have internet access from SageCell, so you definitely can read >>>>>> data from GitHub - as far as for interpreting and parsing them it depends >>>>>> on what you want and need to process them. I think panda is installed, so >>>>>> your code should work - does it not? If something else needs to be >>>>>> installed - let me know! >>>>>> > On Mon, Dec 14, 2020 at 12:05 PM Elimboto Yohana <[email protected]> >>>>>> wrote: >>>>>> >> >>>>>> >> Thank you, Andrey, >>>>>> >> I will let you know If I encounter any issues. There are some >>>>>> warnings, but they don't cause any harm so far. I also hope the available >>>>>> dependencies suffice for current use. >>>>>> >> >>>>>> >> I do not know why my messages do not appear in the Google group, I >>>>>> have actually been replying to both your email and the google group! >>>>>> >> One thing I would like to ask, If I have some astronomical data on >>>>>> a public repository such as GitHub, say the data is in .fits, or .h5 >>>>>> (HDF5) >>>>>> formats, can the data in these file formats be read by parsing the repo >>>>>> URL? Or how can this be done? Is there a limitation for some data >>>>>> formats? >>>>>> >> >>>>>> >> For example, using pandas we can read .csv data file on GitHub as >>>>>> >> df = pd.read_csv(" >>>>>> https://github.com/selva86/datasets/raw/master/mtcars.csv";) >>>>>> >> Kind regards, >>>>>> >> Elimboto >>>>>> >> >>>>>> >> >>>>>> >> On Mon, Dec 14, 2020 at 7:37 PM Andrey Novoseltsev < >>>>>> [email protected]> wrote: >>>>>> >>> >>>>>> >>> Hi Elimboto! >>>>>> >>> If there are cases when they don't work because of some missing >>>>>> optional dependencies, I'll be happy to install those as well! >>>>>> >>> I am also a bit puzzled why your messages do not show up in the >>>>>> google group - as far as I can tell you are allowed to post and there are >>>>>> no messages in moderation. >>>>>> >>> Best, >>>>>> >>> Andrey >>>>>> >>> >>>>>> >>> -- >>>>>> >>> You received this message because you are subscribed to the >>>>>> Google Groups "sage-cell" group. >>>>>> >>> To unsubscribe from this group and stop receiving emails from it, >>>>>> send an email to [email protected]. >>>>>> >>> To view this discussion on the web visit >>>>>> https://groups.google.com/d/msgid/sage-cell/CAD0_dC5qDkhMuMmZj5E%3DvsHiTvnnqvq2Nw637GH8BeMWtrW_%2Bw%40mail.gmail.com >>>>>> . >>>>>> > >>>>>> > -- >>>>>> > You received this message because you are subscribed to the Google >>>>>> Groups "sage-cell" group. >>>>>> > To unsubscribe from this group and stop receiving emails from it, >>>>>> send an email to [email protected]. >>>>>> > To view this discussion on the web visit >>>>>> https://groups.google.com/d/msgid/sage-cell/CAD0_dC65mDrsVEyZUEf%2BNyB7q%2BUTKor0oiC9TAHbnfTGvadftg%40mail.gmail.com >>>>>> . >>>>>> > >>>>> >>>>> -- >>> You received this message because you are subscribed to the Google >>> Groups "sage-cell" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-cell/CAD0_dC5EcDLDCTbZK6Vq4HP8Lqqr-GOD7JyQBQNOm%2Bj-bfJwJw%40mail.gmail.com >>> <https://groups.google.com/d/msgid/sage-cell/CAD0_dC5EcDLDCTbZK6Vq4HP8Lqqr-GOD7JyQBQNOm%2Bj-bfJwJw%40mail.gmail.com?utm_medium=email&utm_source=footer> >>> . >>> >> -- You received this message because you are subscribed to the Google Groups "sage-cell" group. 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