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Using cached file /home/joeblack/DOCS/sage/sage-9.4/upstream/cysignals-1.10.3.tar.gz cysignals-1.10.3 ==================================================== Setting up build directory for cysignals-1.10.3 Finished extraction No patch files found in ../patches **************************************************** Host system: Linux gb_lfs 5.13.10-v0 #1 SMP PREEMPT Thu Aug 26 17:13:20 CDT 2021 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.0/lto-wrapper Target: x86_64-pc-linux-gnu Configured with: ../configure --prefix=/usr LD=ld --enable-languages=c,c++,fortran --disable-multilib --disable-bootstrap --with-system-zlib Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.2.0 (GCC) **************************************************** Package 'cysignals' is currently not installed No legacy uninstaller found for 'cysignals'; nothing to do Configuring cysignals-1.10.3 configure: WARNING: unrecognized options: --disable-static, --disable-maintainer-mode, --disable-dependency-tracking checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether we are using the GNU C++ compiler... yes checking whether gcc accepts -g... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/prctl.h usability... yes checking sys/prctl.h presence... yes checking for sys/prctl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for fork... yes checking for kill... yes checking for sigprocmask... yes checking for sigaltstack... yes checking for backtrace... yes checking for library containing pari_init... -lpari checking whether PARI_SIGINT_block is declared... yes checking for emms instruction... yes checking whether setjmp() saves the signal mask... no checking for GNU libc... yes checking for _Atomic in C code... yes checking for _Atomic with OpenMP in C code... yes checking for _Atomic in C++ code... no checking for std::atomic... yes checking for std::atomic with OpenMP in C++ code... yes configure: creating ./config.status config.status: creating src/cysignals/signals.pxd config.status: creating src/config.h config.status: creating src/cysignals/cysignals_config.h configure: WARNING: unrecognized options: --disable-static, --disable-maintainer-mode, --disable-dependency-tracking Installing cysignals-1.10.3 Ignoring indexes: https://pypi.org/simple Created temporary directory: /tmp/pip-ephem-wheel-cache-ziol4aj8 Created temporary directory: /tmp/pip-req-tracker-nac6_li3 Initialized build tracking at /tmp/pip-req-tracker-nac6_li3 Created build tracker: /tmp/pip-req-tracker-nac6_li3 Entered build tracker: /tmp/pip-req-tracker-nac6_li3 Created temporary directory: /tmp/pip-wheel-76hmicsy Processing /home/joeblack/sage-installation/var/tmp/sage/build/cysignals-1.10.3/src Created temporary directory: /tmp/pip-req-build-l73r52k0 DEPRECATION: A future pip version will change local packages to be built in-place without first copying to a temporary directory. We recommend you use --use-feature=in-tree-build to test your packages with this new behavior before it becomes the default. pip 21.3 will remove support for this functionality. You can find discussion regarding this at https://github.com/pypa/pip/issues/7555. Added file:///home/joeblack/sage-installation/var/tmp/sage/build/cysignals-1.10.3/src to build tracker '/tmp/pip-req-tracker-nac6_li3' Running setup.py (path:/tmp/pip-req-build-l73r52k0/setup.py) egg_info for package from file:///home/joeblack/sage-installation/var/tmp/sage/build/cysignals-1.10.3/src Created temporary directory: /tmp/pip-pip-egg-info-24aiwsr4 Running command python setup.py egg_info running egg_info creating /tmp/pip-pip-egg-info-24aiwsr4/cysignals.egg-info writing /tmp/pip-pip-egg-info-24aiwsr4/cysignals.egg-info/PKG-INFO writing dependency_links to /tmp/pip-pip-egg-info-24aiwsr4/cysignals.egg-info/dependency_links.txt writing requirements to /tmp/pip-pip-egg-info-24aiwsr4/cysignals.egg-info/requires.txt writing top-level names to /tmp/pip-pip-egg-info-24aiwsr4/cysignals.egg-info/top_level.txt writing manifest file '/tmp/pip-pip-egg-info-24aiwsr4/cysignals.egg-info/SOURCES.txt' /home/joeblack/sage-installation/lib/python3.9/site-packages/setuptools/lib2to3_ex.py:10: PendingDeprecationWarning: lib2to3 package is deprecated and may not be able to parse Python 3.10+ from lib2to3.refactor import RefactoringTool, get_fixers_from_package adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*') reading manifest file '/tmp/pip-pip-egg-info-24aiwsr4/cysignals.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'build' no previously-included directories found matching 'dist' no previously-included directories found matching 'tmp' no previously-included directories found matching '.*' no previously-included directories found matching 'example/.*' writing manifest file '/tmp/pip-pip-egg-info-24aiwsr4/cysignals.egg-info/SOURCES.txt' Source in /tmp/pip-req-build-l73r52k0 has version 1.10.3, which satisfies requirement cysignals==1.10.3 from file:///home/joeblack/sage-installation/var/tmp/sage/build/cysignals-1.10.3/src Removed cysignals==1.10.3 from file:///home/joeblack/sage-installation/var/tmp/sage/build/cysignals-1.10.3/src from build tracker '/tmp/pip-req-tracker-nac6_li3' Created temporary directory: /tmp/pip-unpack-jvp8xqs2 Building wheels for collected packages: cysignals Created temporary directory: /tmp/pip-wheel-l91rssp5 Building wheel for cysignals (setup.py): started Destination directory: /tmp/pip-wheel-l91rssp5 Running command /home/joeblack/sage-installation/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-l73r52k0/setup.py'"'"'; __file__='"'"'/tmp/pip-req-build-l73r52k0/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-l91rssp5 running bdist_wheel running build Compiling src/cysignals/signals.pyx because it changed. Compiling src/cysignals/pysignals.pyx because it changed. Compiling src/cysignals/alarm.pyx because it changed. Compiling src/cysignals/pselect.pyx because it changed. Compiling src/cysignals/tests.pyx because it changed. [1/5] Cythonizing src/cysignals/alarm.pyx [2/5] Cythonizing src/cysignals/pselect.pyx [3/5] Cythonizing src/cysignals/pysignals.pyx [4/5] Cythonizing src/cysignals/signals.pyx [5/5] Cythonizing src/cysignals/tests.pyx running build_py /home/joeblack/sage-installation/lib/python3.9/site-packages/setuptools/lib2to3_ex.py:10: PendingDeprecationWarning: lib2to3 package is deprecated and may not be able to parse Python 3.10+ from lib2to3.refactor import RefactoringTool, get_fixers_from_package creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/cysignals copying src/cysignals/__init__.py -> build/lib.linux-x86_64-3.9/cysignals copying src/cysignals/memory.pxi -> build/lib.linux-x86_64-3.9/cysignals copying src/cysignals/signals.pxi -> build/lib.linux-x86_64-3.9/cysignals copying src/cysignals/pysignals.pxd -> build/lib.linux-x86_64-3.9/cysignals copying src/cysignals/memory.pxd -> build/lib.linux-x86_64-3.9/cysignals copying src/cysignals/signals.pxd -> build/lib.linux-x86_64-3.9/cysignals copying src/cysignals/cysignals_config.h -> build/lib.linux-x86_64-3.9/cysignals copying src/cysignals/pxi_warning.h -> build/lib.linux-x86_64-3.9/cysignals copying src/cysignals/macros.h -> build/lib.linux-x86_64-3.9/cysignals copying src/cysignals/struct_signals.h -> build/lib.linux-x86_64-3.9/cysignals running build_ext building 'cysignals.signals' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/build creating build/temp.linux-x86_64-3.9/build/src creating build/temp.linux-x86_64-3.9/build/src/cysignals gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -march=native -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -march=native -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -O2 -g -march=native -Wp,-U_FORTIFY_SOURCE -fPIC -DCYTHON_CLINE_IN_TRACEBACK=0 -U_FORTIFY_SOURCE -Isrc/cysignals -Isrc -I/home/joeblack/sage-installation/include -I/usr/include/python3.9 -c build/src/cysignals/signals.c -o build/temp.linux-x86_64-3.9/build/src/cysignals/signals.o -pthread In file included from build/src/cysignals/signals.c:1570: build/src/cysignals/implementation.c: In function 'setup_trampoline': build/src/cysignals/implementation.c:339:29: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'long int' [-Wsign-compare] 339 | if (trampolinestacksize < PTHREAD_STACK_MIN) | ^ In file included from build/src/cysignals/signals.c:1570: build/src/cysignals/implementation.c: In function 'setup_alt_stack': build/src/cysignals/implementation.c:448:17: error: storage size of 'alt_stack' isn't constant 448 | static char alt_stack[MINSIGSTKSZ + 5120 + BACKTRACELEN * sizeof(void*)]; | ^~~~~~~~~ build/src/cysignals/implementation.c:448:17: warning: unused variable 'alt_stack' [-Wunused-variable] error: command '/usr/bin/gcc' failed with exit code 1 Building wheel for cysignals (setup.py): finished with status 'error' ERROR: Failed building wheel for cysignals Running setup.py clean for cysignals Running command /home/joeblack/sage-installation/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-l73r52k0/setup.py'"'"'; __file__='"'"'/tmp/pip-req-build-l73r52k0/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all running clean removing 'build/temp.linux-x86_64-3.9' (and everything under it) removing 'build/lib.linux-x86_64-3.9' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it Failed to build cysignals ERROR: Failed to build one or more wheels Exception information: Traceback (most recent call last): File "/home/joeblack/sage-installation/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main status = self.run(options, args) File "/home/joeblack/sage-installation/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 204, in wrapper return func(self, options, args) File "/home/joeblack/sage-installation/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run raise CommandError( pip._internal.exceptions.CommandError: Failed to build one or more wheels Removed build tracker: '/tmp/pip-req-tracker-nac6_li3' ******************************************************************************************************************************************************************************************************************** Error building a wheel for cysignals-1.10.3 ********************************************************************************************************************************************************************************************************************
real 0m7.287s user 0m6.790s sys 0m0.571s ************************************************************************ Error installing package cysignals-1.10.3 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log files /home/joeblack/DOCS/sage/sage-9.4/logs/pkgs/cysignals-1.10.3.log and /home/joeblack/DOCS/sage/sage-9.4/config.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/joeblack/sage-installation/var/tmp/sage/build/cysignals-1.10.3 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/joeblack/sage-installation/var/tmp/sage/build/cysignals-1.10.3' && '/home/joeblack/DOCS/sage/sage-9.4/sage' --buildsh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************
