Hi Matthias, I have just finished the builds for sage 9.5 and 9.6 b01 successfully on the root drive (instead of mounted drive which was OK for sage 9.4)
Thank you so much for your patience. I am wondering what is the problem with the mounted drive. Is it a bug in WSL or a feature in Ubuntu and/or Sage I am concerned about the limited disk space on the root drive Again, thank you for your help and patience. Regards, phiho On Tuesday, February 15, 2022 at 11:46:41 AM UTC-5 Matthias Koeppe wrote: > I would suggest to try whether the "Invalid argument" syscall errors go > away if you clone the Sage source tree in the Linux file system, for > example, in "/sage", instead of a location mounted from the Windows file > system (/mnt/g/Maths/sage-9.5/clone/). > > > > > On Tuesday, February 15, 2022 at 12:14:30 AM UTC-8 hohoa...@gmail.com > wrote: > >> Hi, >> >> Thank you so much for your advice. >> >> I just started afresh with a new clone from github and following the >> instructions from https://sagemanifolds.obspm.fr/install_ubuntu.html >> >> After running './configure', conda was deactivated (twice): >> >> $ which conda >> /home/hph/miniconda3/bin/conda >> >> $ conda deactivate >> $ conda deactivate >> >> Then: >> >> $ make ccache >> $ MAKE="make -j8" make >> >> after 10 times of -re-make (with MAKE="make -j8"): >> >> $ ls -l *.log | wc -l >> 152 >> >> $ ls -l *.log.error | wc -l >> 12 >> >> All the errors from the earlier make's seemed to be fixed eventually in >> the later re-make, all except 'scipy-1.7.2' and 'sagelib-9.5' >> >> Please find attached 'config.log.7z' and 'Error building a wheel for >> scipy-1.7.2 - scipy-1.7.2.log.error.7z' (from re-make #5 to #10) and >> 'sagelib-9.5.log.error.7z' >> >> The re-make #10, scipy-1.7.2 failed with: >> >> *error: Command "gfortran -Wall -g -ffixed-form -fno-second-underscore -g >> -O2 -fPIC -fPIC -O3 -funroll-loops >> -I/mnt/g/Maths/sage-9.5/clone/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/numpy/core/include >> >> -Ibuild/src.linux-x86_64-3.8/numpy/distutils/include -c -c >> scipy/interpolate/fitpack/curev.f -o >> build/temp.linux-x86_64-3.8/scipy/interpolate/fitpack/curev.o" failed with >> exit status 1* >> >> ########### CLIB COMPILER OPTIMIZATION ########### >> Platform : >> Architecture: x64 >> Compiler : gcc >> >> CPU baseline : >> Requested : 'min' >> Enabled : SSE SSE2 SSE3 >> Flags : -msse -msse2 -msse3 >> Extra checks: none >> >> CPU dispatch : >> Requested : 'max -xop -fma4' >> Enabled : SSSE3 SSE41 POPCNT SSE42 AVX F16C FMA3 AVX2 AVX512F >> AVX512CD AVX512_KNL AVX512_KNM AVX512_SKX AVX512_CLX AVX512_CNL AVX512_ICL >> Generated : none >> CCompilerOpt.cache_flush[809] : write cache to path -> >> /mnt/g/Maths/sage-9.5/clone/local/var/lib/sage/venv-python3.8/var/tmp/sage/build/scipy-1.7.2/src/build/temp.linux-x86_64-3.8/ccompiler_opt_cache_clib.py >> *error: Command "gfortran -Wall -g -ffixed-form -fno-second-underscore >> -g -O2 -fPIC -fPIC -O3 -funroll-loops >> -I/mnt/g/Maths/sage-9.5/clone/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/numpy/core/include >> >> -Ibuild/src.linux-x86_64-3.8/numpy/distutils/include -c -c >> scipy/interpolate/fitpack/curev.f -o >> build/temp.linux-x86_64-3.8/scipy/interpolate/fitpack/curev.o" failed with >> exit status 1* >> Building wheel for scipy (pyproject.toml): finished with status 'error' >> ERROR: Failed building wheel for scipy >> Failed to build scipy >> ERROR: Failed to build one or more wheels >> >> ******************************************************************************** >> Error building a wheel for scipy-1.7.2 >> >> ******************************************************************************** >> >> real 3m25.289s >> user 6m14.359s >> sys 1m47.406s >> >> In the re-make #12, 'sagelib-9.5' build failed with: >> *error: [Errno 22] Invalid argument: 'sage/rings/power_series_poly.pxd'* >> >> Discovering Python/Cython source code.... >> distributions = [''] >> Discovered Python/Cython sources, time: 2.99 seconds. >> running build >> Generating auto-generated sources >> Building interpreters for fast_callable >> running build_cython >> Enabling Cython debugging support >> *error: [Errno 22] Invalid argument: 'sage/rings/power_series_poly.pxd'* >> >> real 0m17.411s >> user 0m4.844s >> sys 0m11.797s >> >> >> Regards, >> >> phiho >> >> >> On Thu, Feb 3, 2022 at 2:36 PM Matthias Koeppe <matthia...@gmail.com> >> wrote: >> >>> It would probably be a good idea to do "make ccache" and then re-attempt >>> the build. >>> On Thursday, February 3, 2022 at 11:32:32 AM UTC-8 hohoa...@gmail.com >>> wrote: >>> >>>> Hi, >>>> >>>> Actually this approach was tried a few times before. The report was >>>> from a fresh clone and build. >>>> >>>> 'MAKE="make -j8" make' was just tried again and the re-make ended >>>> with these failed packages: >>>> >>>> <quote> >>>> real 13m20.842s >>>> user 14m38.391s >>>> sys 6m4.781s >>>> *************************************************************** >>>> Error building Sage. >>>> >>>> The following package(s) may have failed to build (not necessarily >>>> during this run of 'make all-start'): >>>> >>>> * package: arb-2.19.0.p0 >>>> last build time: Feb 3 12:08 >>>> log file: >>>> /mnt/g/Maths/sage-9.5/clone/logs/pkgs/arb-2.19.0.p0.log >>>> >>>> * package: pplpy-0.8.6 >>>> last build time: Feb 3 12:09 >>>> log file: /mnt/g/Maths/sage-9.5/clone/logs/pkgs/pplpy-0.8.6.log >>>> >>>> * package: sphinx-4.2.0 >>>> last build time: Feb 3 12:09 >>>> log file: >>>> /mnt/g/Maths/sage-9.5/clone/logs/pkgs/sphinx-4.2.0.log >>>> >>>> * package: numpy-1.21.4 >>>> last build time: Feb 3 12:13 >>>> log file: >>>> /mnt/g/Maths/sage-9.5/clone/logs/pkgs/numpy-1.21.4.log >>>> >>>> It is safe to delete any log files and build directories, but they >>>> contain information that is helpful for debugging build problems. >>>> WARNING: If you now run 'make' again, the build directory of the >>>> same version of the package will, by default, be deleted. Set the >>>> environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. >>>> >>>> </quote> >>>> >>>> Please find attached 'config.log.7z' and the logs of failed packages* >>>> including numpy-1.21.4*.log2.7z. >>>> >>>> FWIW, 'sage-9.4' was successfully built (the first time) from the >>>> tarball (with 'configure' pre-made, downloaded from github) on this same >>>> machine about a week ago. >>>> (The tarball for 'sage-9.5' did not go far) >>>> >>>> numpy-1.21.4 still failed in another re-make >>>> >>>> Regards, >>>> >>>> phiho >>>> >>>> P.S: I will be out of town and will have no access to the Internet (a >>>> couple weeks or so), please allow me to catch up later on. >>>> >>>> >>>> On Thu, Feb 3, 2022 at 11:20 AM Matthias Koeppe <matthia...@gmail.com> >>>> wrote: >>>> >>>>> The compilation fails with a failed system call: >>>>> >>>>> /usr/include/x86_64-linux-gnu/bits/types.h:142:10: fatal error: >>>>> /mnt/g/Maths/sage-9.5/clone/local/var/lib/sage/venv-python3.8/include/bits/time64.h: >>>>> >>>>> Invalid argument >>>>> 142 | #include <bits/time64.h> /* Defines __TIME*_T_TYPE macros. >>>>> */ >>>>> | ^~~~~~~~~~~~~~~ >>>>> compilation terminated. >>>>> >>>>> This is likely sporadic and will go away if you just restart "make". >>>>> Tracked at https://trac.sagemath.org/ticket/31088 >>>>> >>>>> >>>>> >>>>> On Thursday, February 3, 2022 at 1:22:11 AM UTC-8 hohoa...@gmail.com >>>>> wrote: >>>>> >>>>>> Greetings, >>>>>> >>>>>> The instructions at >>>>>> https://sagemanifolds.obspm.fr/install_ubuntu.html were followed. >>>>>> >>>>>> It is much appreciated if someone would kindly point out what was >>>>>> missing in the build process. >>>>>> >>>>>> Please find attached 'install.log.7z' and 'numpy-1.21.4.log.7z' >>>>>> >>>>>> Regards, >>>>>> >>>>>> phiho >>>>>> >>>>>> P.S: >>>>>> $ uname -a >>>>>> Linux 4.4.0-17763-Microsoft #2268-Microsoft Thu Oct 07 16:36:00 PST >>>>>> 2021 x86_64 x86_64 x86_64 GNU/Linux >>>>>> >>>>>> >>>>>> -- >>>>> You received this message because you are subscribed to the Google >>>>> Groups "sage-devel" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send >>>>> an email to sage-devel+...@googlegroups.com. >>>>> To view this discussion on the web visit >>>>> https://groups.google.com/d/msgid/sage-devel/461e60bb-5ae8-453c-b332-2bf2b02d6e14n%40googlegroups.com >>>>> >>>>> <https://groups.google.com/d/msgid/sage-devel/461e60bb-5ae8-453c-b332-2bf2b02d6e14n%40googlegroups.com?utm_medium=email&utm_source=footer> >>>>> . >>>>> >>>> -- >>> You received this message because you are subscribed to the Google >>> Groups "sage-devel" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to sage-devel+...@googlegroups.com. >>> >> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-devel/751fde85-2d70-4fad-9f5a-05114f670b74n%40googlegroups.com >>> >>> <https://groups.google.com/d/msgid/sage-devel/751fde85-2d70-4fad-9f5a-05114f670b74n%40googlegroups.com?utm_medium=email&utm_source=footer> >>> . >>> >> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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