I think it's a bug in WSL 1. We should update our WSL install instructions to mention this limitation.
You could also try if switching to WSL 2 improves the situation when using the mounted drive. On Wednesday, February 16, 2022 at 12:04:41 PM UTC-8 hohoa...@gmail.com wrote: > Hi Matthias, > > I have just finished the builds for sage 9.5 and 9.6 b01 successfully on > the root drive (instead of mounted drive which was OK for sage 9.4) > > Thank you so much for your patience. I am wondering what is the problem > with the mounted drive. > Is it a bug in WSL or a feature in Ubuntu and/or Sage I am concerned > about the limited disk space on the root drive > > Again, thank you for your help and patience. > > Regards, > > phiho > > > On Tuesday, February 15, 2022 at 11:46:41 AM UTC-5 Matthias Koeppe wrote: > >> I would suggest to try whether the "Invalid argument" syscall errors go >> away if you clone the Sage source tree in the Linux file system, for >> example, in "/sage", instead of a location mounted from the Windows file >> system (/mnt/g/Maths/sage-9.5/clone/). >> >> >> >> >> On Tuesday, February 15, 2022 at 12:14:30 AM UTC-8 hohoa...@gmail.com >> wrote: >> >>> Hi, >>> >>> Thank you so much for your advice. >>> >>> I just started afresh with a new clone from github and following the >>> instructions from https://sagemanifolds.obspm.fr/install_ubuntu.html >>> >>> After running './configure', conda was deactivated (twice): >>> >>> $ which conda >>> /home/hph/miniconda3/bin/conda >>> >>> $ conda deactivate >>> $ conda deactivate >>> >>> Then: >>> >>> $ make ccache >>> $ MAKE="make -j8" make >>> >>> after 10 times of -re-make (with MAKE="make -j8"): >>> >>> $ ls -l *.log | wc -l >>> 152 >>> >>> $ ls -l *.log.error | wc -l >>> 12 >>> >>> All the errors from the earlier make's seemed to be fixed eventually in >>> the later re-make, all except 'scipy-1.7.2' and 'sagelib-9.5' >>> >>> Please find attached 'config.log.7z' and 'Error building a wheel for >>> scipy-1.7.2 - scipy-1.7.2.log.error.7z' (from re-make #5 to #10) and >>> 'sagelib-9.5.log.error.7z' >>> >>> The re-make #10, scipy-1.7.2 failed with: >>> >>> *error: Command "gfortran -Wall -g -ffixed-form -fno-second-underscore >>> -g -O2 -fPIC -fPIC -O3 -funroll-loops >>> -I/mnt/g/Maths/sage-9.5/clone/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/numpy/core/include >>> >>> -Ibuild/src.linux-x86_64-3.8/numpy/distutils/include -c -c >>> scipy/interpolate/fitpack/curev.f -o >>> build/temp.linux-x86_64-3.8/scipy/interpolate/fitpack/curev.o" failed with >>> exit status 1* >>> >>> ########### CLIB COMPILER OPTIMIZATION ########### >>> Platform : >>> Architecture: x64 >>> Compiler : gcc >>> >>> CPU baseline : >>> Requested : 'min' >>> Enabled : SSE SSE2 SSE3 >>> Flags : -msse -msse2 -msse3 >>> Extra checks: none >>> >>> CPU dispatch : >>> Requested : 'max -xop -fma4' >>> Enabled : SSSE3 SSE41 POPCNT SSE42 AVX F16C FMA3 AVX2 AVX512F >>> AVX512CD AVX512_KNL AVX512_KNM AVX512_SKX AVX512_CLX AVX512_CNL AVX512_ICL >>> Generated : none >>> CCompilerOpt.cache_flush[809] : write cache to path -> >>> /mnt/g/Maths/sage-9.5/clone/local/var/lib/sage/venv-python3.8/var/tmp/sage/build/scipy-1.7.2/src/build/temp.linux-x86_64-3.8/ccompiler_opt_cache_clib.py >>> *error: Command "gfortran -Wall -g -ffixed-form >>> -fno-second-underscore -g -O2 -fPIC -fPIC -O3 -funroll-loops >>> -I/mnt/g/Maths/sage-9.5/clone/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/numpy/core/include >>> >>> -Ibuild/src.linux-x86_64-3.8/numpy/distutils/include -c -c >>> scipy/interpolate/fitpack/curev.f -o >>> build/temp.linux-x86_64-3.8/scipy/interpolate/fitpack/curev.o" failed with >>> exit status 1* >>> Building wheel for scipy (pyproject.toml): finished with status 'error' >>> ERROR: Failed building wheel for scipy >>> Failed to build scipy >>> ERROR: Failed to build one or more wheels >>> >>> ******************************************************************************** >>> Error building a wheel for scipy-1.7.2 >>> >>> ******************************************************************************** >>> >>> real 3m25.289s >>> user 6m14.359s >>> sys 1m47.406s >>> >>> In the re-make #12, 'sagelib-9.5' build failed with: >>> *error: [Errno 22] Invalid argument: 'sage/rings/power_series_poly.pxd'* >>> >>> Discovering Python/Cython source code.... >>> distributions = [''] >>> Discovered Python/Cython sources, time: 2.99 seconds. >>> running build >>> Generating auto-generated sources >>> Building interpreters for fast_callable >>> running build_cython >>> Enabling Cython debugging support >>> *error: [Errno 22] Invalid argument: 'sage/rings/power_series_poly.pxd'* >>> >>> real 0m17.411s >>> user 0m4.844s >>> sys 0m11.797s >>> >>> >>> Regards, >>> >>> phiho >>> >>> >>> On Thu, Feb 3, 2022 at 2:36 PM Matthias Koeppe <matthia...@gmail.com> >>> wrote: >>> >>>> It would probably be a good idea to do "make ccache" and then >>>> re-attempt the build. >>>> On Thursday, February 3, 2022 at 11:32:32 AM UTC-8 hohoa...@gmail.com >>>> wrote: >>>> >>>>> Hi, >>>>> >>>>> Actually this approach was tried a few times before. The report was >>>>> from a fresh clone and build. >>>>> >>>>> 'MAKE="make -j8" make' was just tried again and the re-make ended >>>>> with these failed packages: >>>>> >>>>> <quote> >>>>> real 13m20.842s >>>>> user 14m38.391s >>>>> sys 6m4.781s >>>>> *************************************************************** >>>>> Error building Sage. >>>>> >>>>> The following package(s) may have failed to build (not necessarily >>>>> during this run of 'make all-start'): >>>>> >>>>> * package: arb-2.19.0.p0 >>>>> last build time: Feb 3 12:08 >>>>> log file: >>>>> /mnt/g/Maths/sage-9.5/clone/logs/pkgs/arb-2.19.0.p0.log >>>>> >>>>> * package: pplpy-0.8.6 >>>>> last build time: Feb 3 12:09 >>>>> log file: >>>>> /mnt/g/Maths/sage-9.5/clone/logs/pkgs/pplpy-0.8.6.log >>>>> >>>>> * package: sphinx-4.2.0 >>>>> last build time: Feb 3 12:09 >>>>> log file: >>>>> /mnt/g/Maths/sage-9.5/clone/logs/pkgs/sphinx-4.2.0.log >>>>> >>>>> * package: numpy-1.21.4 >>>>> last build time: Feb 3 12:13 >>>>> log file: >>>>> /mnt/g/Maths/sage-9.5/clone/logs/pkgs/numpy-1.21.4.log >>>>> >>>>> It is safe to delete any log files and build directories, but they >>>>> contain information that is helpful for debugging build problems. >>>>> WARNING: If you now run 'make' again, the build directory of the >>>>> same version of the package will, by default, be deleted. Set the >>>>> environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. >>>>> >>>>> </quote> >>>>> >>>>> Please find attached 'config.log.7z' and the logs of failed packages* >>>>> including numpy-1.21.4*.log2.7z. >>>>> >>>>> FWIW, 'sage-9.4' was successfully built (the first time) from the >>>>> tarball (with 'configure' pre-made, downloaded from github) on this same >>>>> machine about a week ago. >>>>> (The tarball for 'sage-9.5' did not go far) >>>>> >>>>> numpy-1.21.4 still failed in another re-make >>>>> >>>>> Regards, >>>>> >>>>> phiho >>>>> >>>>> P.S: I will be out of town and will have no access to the Internet (a >>>>> couple weeks or so), please allow me to catch up later on. >>>>> >>>>> >>>>> On Thu, Feb 3, 2022 at 11:20 AM Matthias Koeppe <matthia...@gmail.com> >>>>> wrote: >>>>> >>>>>> The compilation fails with a failed system call: >>>>>> >>>>>> /usr/include/x86_64-linux-gnu/bits/types.h:142:10: fatal error: >>>>>> /mnt/g/Maths/sage-9.5/clone/local/var/lib/sage/venv-python3.8/include/bits/time64.h: >>>>>> >>>>>> Invalid argument >>>>>> 142 | #include <bits/time64.h> /* Defines __TIME*_T_TYPE macros. >>>>>> */ >>>>>> | ^~~~~~~~~~~~~~~ >>>>>> compilation terminated. >>>>>> >>>>>> This is likely sporadic and will go away if you just restart "make". >>>>>> Tracked at https://trac.sagemath.org/ticket/31088 >>>>>> >>>>>> >>>>>> >>>>>> On Thursday, February 3, 2022 at 1:22:11 AM UTC-8 hohoa...@gmail.com >>>>>> wrote: >>>>>> >>>>>>> Greetings, >>>>>>> >>>>>>> The instructions at >>>>>>> https://sagemanifolds.obspm.fr/install_ubuntu.html were followed. >>>>>>> >>>>>>> It is much appreciated if someone would kindly point out what was >>>>>>> missing in the build process. >>>>>>> >>>>>>> Please find attached 'install.log.7z' and 'numpy-1.21.4.log.7z' >>>>>>> >>>>>>> Regards, >>>>>>> >>>>>>> phiho >>>>>>> >>>>>>> P.S: >>>>>>> $ uname -a >>>>>>> Linux 4.4.0-17763-Microsoft #2268-Microsoft Thu Oct 07 16:36:00 PST >>>>>>> 2021 x86_64 x86_64 x86_64 GNU/Linux >>>>>>> >>>>>>> >>>>>>> -- >>>>>> You received this message because you are subscribed to the Google >>>>>> Groups "sage-devel" group. >>>>>> To unsubscribe from this group and stop receiving emails from it, >>>>>> send an email to sage-devel+...@googlegroups.com. >>>>>> To view this discussion on the web visit >>>>>> https://groups.google.com/d/msgid/sage-devel/461e60bb-5ae8-453c-b332-2bf2b02d6e14n%40googlegroups.com >>>>>> >>>>>> <https://groups.google.com/d/msgid/sage-devel/461e60bb-5ae8-453c-b332-2bf2b02d6e14n%40googlegroups.com?utm_medium=email&utm_source=footer> >>>>>> . >>>>>> >>>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "sage-devel" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to sage-devel+...@googlegroups.com. >>>> >>> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/sage-devel/751fde85-2d70-4fad-9f5a-05114f670b74n%40googlegroups.com >>>> >>>> <https://groups.google.com/d/msgid/sage-devel/751fde85-2d70-4fad-9f5a-05114f670b74n%40googlegroups.com?utm_medium=email&utm_source=footer> >>>> . >>>> >>> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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