Michael, Yes I do have R installed on my system. No, RHOMES is not set; however, R_HOMES is set to /usr/lib64/R. Apparently, the R installation does this. And yes I do have the install.log. The specific test fails as:
sage -t devel/sage/sage/stats/test.py ********************************************************************** File "/local/sage-3.0/tmp/test.py", line 5: sage: import rpy Exception raised: Traceback (most recent call last): File "/local/sage-3.0/local/lib/python2.5/doctest.py", line 1228, in __run compileflags, 1) in test.globs File "<doctest __main__.example_0[1]>", line 1, in <module> import rpy###line 5: sage: import rpy File "/local/sage-3.0/local/lib/python2.5/site-packages/rpy.py", line 58, in <m odule> RVERSION = rpy_tools.get_R_VERSION(RHOME) File "/local/sage-3.0/local/lib/python2.5/site-packages/ rpy_tools.py", line 99, in get_R_VERSION " `%s'.\n" % rexec ) RuntimeError: Couldn't execute the R interpreter `/usr/lib64/R/bin/ R'. ********************************************************************** 1 items had failures: 1 of 2 in __main__.example_0 ***Test Failed*** 1 failures. For whitespace errors, see the file /local/sage-3.0/ tmp/.doctest_test.py [1.5 s] exit code: 1024 ---------------------------------------------------------------------- The following tests failed: sage -t devel/sage/sage/stats/test.py Total time for all tests: 1.5 seconds I've built sage previously, but without R installed. I suspect the installed (Portage) R is conflicting with what sage does. Let me know if you wish to see the install.log. I'm presently re-building sage in a shell where I've disabled the R_HOME variable. Steve On Apr 23, 2:51 pm, mabshoff <[EMAIL PROTECTED] dortmund.de> wrote: > On Apr 23, 4:52 pm, strogdon <[EMAIL PROTECTED]> wrote: > > Hi, > > > > > On my Gentoo box I unpacked the subject tarball, changed to the sage > > directory and did a make with the results: > > > gcc version 4.1.2 (Gentoo 4.1.2 p1.0.2) > > **************************************************** > > **************************************************** > > RHOMES= [] > > DEBUG= True > > Setting RHOMES to ['/usr/lib64/R'] > > RHOMES= [] > > DEBUG= True > > Setting RHOMES to ['/usr/lib64/R'] > > Traceback (most recent call last): > > Traceback (most recent call last): > > File "setup.py", line 106, in <module> > > File "setup.py", line 106, in <module> > > RVERSION = rpy_tools.get_R_VERSION(RHOME, force_exec=True) > > RVERSION = rpy_tools.get_R_VERSION(RHOME, force_exec=True) > > File "/local/sage-3.0/spkg/build/rpy-1.0.1.p1/src/rpy_tools.py", > > line 99, in get_R_VERSION > > File "/local/sage-3.0/spkg/build/rpy-1.0.1.p1/src/rpy_tools.py", > > line 99, in get_R_VERSION > > " `%s'.\n" % rexec ) > > " `%s'.\n" % rexec ) > > RuntimeErrorRuntimeError: : Couldn't execute the R interpreter `/usr/ > > lib64/R/bin/R'. > > Couldn't execute the R interpreter `/usr/lib64/R/bin/R'. > > > Error building RPY -- Python interface to R. > > Error building RPY -- Python interface to R. > > Do you have R installed in the system? Is RHOMES set? Do you have the > build log? > > > I tried several corrective measures and the only one that allowed sage > > to build was to issue: > > > RHOMES="`pwd`/local/lib/R" make > > > However, the following test failed: > > > sage -t devel/sage/sage/stats/test.py > > What did fail? Can you post the log of only that test? > > Cheers, > > Michael --~--~---------~--~----~------------~-------~--~----~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~----------~----~----~----~------~----~------~--~---