kcrisman wrote: > Dear sage-devel, > > It's time to fix our R stuff. I have some suspicions on some issues, > so I would appreciate if people on a wide variety of machines could > try the following and reply to this thread. > > sage: r.install_packages('aaMI') > # hopefully a happy result > sage: r.console() >> install.packages('abind') > # you'll be asked to pick a mirror using a Tcl/Tk thingie> > # hopefully a happy result > > I have already done OSX 10.5 on Macintel, where it works fine, as well > as on sage.math (some kind of Linux, I guess), where it doesn't for > some reason (see #4959 for details), though only for the second > package which seems to require something unusual. Reports would help > a lot with figuring out what is going on with #4959 and #5246. Please > note that these packages don't depend on anything else, so the > problems from #6532 or #2198 should not occur.
This is on x86 64-bit Ubuntu Karmic, sage 4.3.rc0. Thanks, Jason % sage ---------------------------------------------------------------------- | Sage Version 4.3.rc0, Release Date: 2009-12-10 | | Type notebook() for the GUI, and license() for information. | ---------------------------------------------------------------------- ********************************************************************** * * * Warning: this is a prerelease version, and it may be unstable. * * * ********************************************************************** sage: r.install_packages('aaMI') 0.00user 0.00system 0:00.00elapsed 0%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+214minor)pagefaults 0swaps R version 2.9.2 (2009-08-24) Copyright (C) 2009 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > options(repos="http://cran.r-project.org/"); install.packages("aaMI") trying URL 'http://cran.r-project.org/src/contrib/aaMI_1.0-1.tar.gz' Content type 'application/x-gzip' length 3487 bytes opened URL ================================================== downloaded 3487 bytes * Installing *source* package ‘aaMI’ ... ** R ** preparing package for lazy loading Error in if (file.info(codeFile)["size"] == file.info(loaderFile)["size"]) warning("package seems to be using lazy loading already") else { : missing value where TRUE/FALSE needed ERROR: lazy loading failed for package ‘aaMI’ * Removing ‘/home/grout/sage-4.3.rc0/local/lib/R/library/aaMI’ The downloaded packages are in ‘/tmp/RtmpxzBKKg/downloaded_packages’ Updating HTML index of packages in '.Library' Warning messages: 1: In install.packages("aaMI") : installation of package 'aaMI' had non-zero exit status 2: In file.create(f.tg) : cannot create file '/dev/shm/sage-4.3.rc0/local/lib/R/doc/html/packages.html', reason 'No such file or directory' 3: In tools:::unix.packages.html(.Library) : cannot create HTML package index > Please restart Sage or restart the R interface (via r.restart()) in order to use 'aaMI'. sage: Exiting SAGE (CPU time 0m0.03s, Wall time 0m20.52s). % sage ---------------------------------------------------------------------- | Sage Version 4.3.rc0, Release Date: 2009-12-10 | | Type notebook() for the GUI, and license() for information. | ---------------------------------------------------------------------- ********************************************************************** * * * Warning: this is a prerelease version, and it may be unstable. * * * ********************************************************************** sage: r.console() R version 2.9.2 (2009-08-24) Copyright (C) 2009 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > install.packages('abind') --- Please select a CRAN mirror for use in this session --- CRAN mirror 1: Argentina (Buenos Aires) 2: Australia 3: Austria 4: Belarus 5: Belgium 6: Brazil (PR) 7: Brazil (RJ) 8: Brazil (SP 1) 9: Brazil (SP 2) 10: Canada (BC) 11: Canada (ON) 12: Canada (QC) 13: Chile 14: China (Beijing 1) 15: China (Beijing 2) 16: China (Hong Kong) 17: Colombia 18: Denmark 19: France (Toulouse) 20: France (Lyon) 21: France (Paris) 22: Germany (Berlin) 23: Germany (Goettingen) 24: Germany (Hannover) 25: Germany (Muenchen) 26: Germany (Wiesbaden) 27: Iran 28: Ireland 29: Italy (Milano) 30: Italy (Padua) 31: Italy (Palermo) 32: Japan (Aizu) 33: Japan (Hyogo) 34: Japan (Tokyo) 35: Japan (Tsukuba) 36: Korea 37: Netherlands 38: New Zealand 39: Norway 40: Poland (Oswiecim) 41: Poland (Wroclaw) 42: Portugal 43: Russia 44: Singapore 1 45: Singapore 2 46: Slovakia 47: South Africa 48: Spain (Madrid) 49: Sweden 50: Switzerland 51: Taiwan (Taichung) 52: Taiwan (Taipeh) 53: Thailand 54: UK (Bristol) 55: UK (London) 56: USA (AZ) 57: USA (CA 1) 58: USA (CA 2) 59: USA (IA) 60: USA (MA) 61: USA (MD) 62: USA (MI) 63: USA (MO) 64: USA (NC) 65: USA (OH) 66: USA (PA 1) 67: USA (PA 2) 68: USA (TN) 69: USA (TX 1) 70: USA (TX 3) 71: USA (WA) Selection: 65 trying URL 'http://cran.case.edu/src/contrib/abind_1.1-0.tar.gz' Content type 'application/x-gzip' length 10280 bytes (10 Kb) opened URL ================================================== downloaded 10 Kb * Installing *source* package ‘abind’ ... ** R ** preparing package for lazy loading Error in if (file.info(codeFile)["size"] == file.info(loaderFile)["size"]) warning("package seems to be using lazy loading already") else { : missing value where TRUE/FALSE needed ERROR: lazy loading failed for package ‘abind’ * Removing ‘/home/grout/sage-4.3.rc0/local/lib/R/library/abind’ The downloaded packages are in ‘/tmp/RtmpumN13m/downloaded_packages’ Updating HTML index of packages in '.Library' Warning messages: 1: In install.packages("abind") : installation of package 'abind' had non-zero exit status 2: In file.create(f.tg) : cannot create file '/dev/shm/sage-4.3.rc0/local/lib/R/doc/html/packages.html', reason 'No such file or directory' 3: In tools:::unix.packages.html(.Library) : cannot create HTML package index > -- To post to this group, send an email to sage-devel@googlegroups.com To unsubscribe from this group, send an email to sage-devel+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-devel URL: http://www.sagemath.org