could it be just the difference in compiler?
in my case it was gcc 4.1.2:

edekl...@pilatus:~/gap/gap4r4> gcc -v
Using built-in specs.
Target: ia64-suse-linux
Configured with: ../configure --enable-threads=posix --prefix=/usr --
with-local-prefix=/usr/local --infodir=/usr/share/info --mandir=/usr/
share/man --libdir=/usr/lib --libexecdir=/usr/lib --enable-
languages=c,c++,objc,fortran,obj-c++,java,ada --enable-
checking=release --with-gxx-include-dir=/usr/include/c++/4.1.2 --
enable-ssp --disable-libssp --disable-libgcj --with-slibdir=/lib --
with-system-zlib --enable-shared --enable-__cxa_atexit --enable-
libstdcxx-allocator=new --program-suffix= --enable-version-specific-
runtime-libs --with-system-libunwind --host=ia64-suse-linux
Thread model: posix
gcc version 4.1.2 20070115 (SUSE Linux)


On Jan 18, 6:54 am, William Stein <wst...@gmail.com> wrote:
> 2010/1/17 Dima Pasechnik <dimp...@gmail.com>:
>
> > Attempting to build 4.3.1.rc0 on ia64 with opensuse, I get an error
> > during the building of R:
>
> > gcc -std=gnu99 -Wl,--export-dynamic  -L/home/edeklerk/sage/
> > sage-4.3.1.rc0/local/lib/  -o R.bin Rmain.o -L../../lib -lR
> > /home/edeklerk/sage/sage-4.3.1.rc0/local/lib//libatlas.so: undefined
> > reference to `__divsi3'
> > collect2: ld returned 1 exit status
> > make[5]: *** [R.bin] Error 1
>
> > Does it actually mean that Atlas did not build OK?
>
> > the complete install.log is here:
> >http://www1.spms.ntu.edu.sg/~dima/tmp/install.log.gz
>
> I don't know.  As a quick datapoint, I was able to build
> sage-4.3.1.rc0 just fine on an IA64 with:
>
>    Welcome to SUSE Linux Enterprise Server 10 SP1 (ia64) - Kernel \r (\l).
>
> I used this gcc:
>
> sage subshell$ gcc -v
> Using built-in specs.
> Target: ia64-unknown-linux-gnu
> Configured with: /usr/local/gcc-4.4.2/src/gcc-4.4.2/configure
> --enable-languages=c,c++,fortran --with-gnu-as
> --with-as=/usr/local/binutils-2.20/ia64-Linux-suse-gcc-4.4.2/bin/as
> --with-gnu-ld 
> --with-ld=/usr/local/binutils-2.20/ia64-Linux-suse-gcc-4.4.2/bin/ld
> --with-gmp=/usr/local/mpir-1.2.1/ia64-Linux-rhel-gcc-4.4.0
> --with-mpfr=/usr/local/mpfr-2.4.1/ia64-Linux-mpir-1.2.1-gcc-4.4.0
> --prefix=/usr/local/gcc-4.4.2/ia64-Linux-suse-binutils-2.20
> Thread model: posix
> gcc version 4.4.2 (GCC)
> /home/wstein/screen/iras/sage-4.3.1.rc0/spkg/standard/ghmm-20080813.p0/src/ 
> ghmm
> sage subshell$
>
> William
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