That file please: /Users/lauve/sage-devel/local/var/tmp/sage/build/mpfr-3.1.2.p0/src/config.log
> On 19/06/2015, at 08:43, la...@math.luc.edu wrote: > > Re: possibly needing to install Xcode: > I installed it. restarted machine. ran 'make distclean' then ran 'make'. Same > problem. two files (float.h and stdarg.h) that cannot be found, though they > exist. > > 'xcode-select --version' and 'gcc --version' return the same output as I > mentioned before. > > > Here are the logs, in full. > > ~~~~~~~ > ~~~ mpfr > ~~~~~~~~~~~~~~~~~~ > Found local metadata for mpfr-3.1.2.p0 > Found local sources at /Users/lauve/sage-devel/upstream/mpfr-3.1.2.tar.bz2 > Checksum: e70341aa7974b4ba1023c75c750aca68222b0723 vs > e70341aa7974b4ba1023c75c750aca68222b0723 > mpfr-3.1.2.p0 > ==================================================== > Setting up build directory for mpfr-3.1.2.p0 > Finished set up > **************************************************** > Host system: > Darwin weehawken.local 14.3.0 Darwin Kernel Version 14.3.0: Mon Mar 23 > 11:59:05 PDT 2015; root:xnu-2782.20.48~5/RELEASE_X86_64 x86_64 > **************************************************** > C compiler: /usr/bin/clang > C compiler version: > Apple LLVM version 6.1.0 (clang-602.0.53) (based on LLVM 3.6.0svn) > Target: x86_64-apple-darwin14.3.0 > Thread model: posix > **************************************************** > Patching MPFR... > > Now configuring MPFR... > Checking what CC and CFLAGS MPFR would use if they were empty... > Settings chosen by MPFR when configuring with CC and CFLAGS unset: > CC: /usr/bin/gcc > CFLAGS: -Wall -Wmissing-prototypes -Wpointer-arith -m64 -O2 > -march=corei7-avx -mtune=corei7-avx -g > Settings required to properly build MPFR, taking into account SAGE_DEBUG etc.: > CFLAGS: > LDFLAGS: > ABI: > Settings from the "global" environment: > CC: /usr/bin/clang > CFLAGS: > (CPPFLAGS, CXX and CXXFLAGS are listed below; these don't get modified.) > Using MPFR's settings (plus mandatory ones). > Finally using the following settings: > CC=/usr/bin/clang > CFLAGS=-Wall -Wmissing-prototypes -Wpointer-arith -m64 -O2 > -march=corei7-avx -mtune=corei7-avx -g > CPP= > CPPFLAGS= > CXX=/usr/bin/clang++ > CXXFLAGS= > LDFLAGS= > ABI= > (These settings may still get overridden by 'configure' or Makefiles.) > > Configuring MPFR with the following options: > --prefix="/Users/lauve/sage-devel/local" > --libdir="/Users/lauve/sage-devel/local/lib" > --with-gmp="/Users/lauve/sage-devel/local" > --disable-thread-safe > You can set MPFR_CONFIGURE to pass additional parameters. > checking for a BSD-compatible install... /usr/bin/install -c > checking whether build environment is sane... yes > checking for a thread-safe mkdir -p... ./install-sh -c -d > checking for gawk... no > checking for mawk... no > checking for nawk... no > checking for awk... awk > checking whether make sets $(MAKE)... yes > checking whether to enable maintainer-specific portions of Makefiles... yes > checking build system type... x86_64-apple-darwin14.3.0 > checking host system type... x86_64-apple-darwin14.3.0 > checking for grep that handles long lines and -e... /usr/bin/grep > checking for egrep... /usr/bin/grep -E > checking for a sed that does not truncate output... /usr/bin/sed > checking for gcc... /usr/bin/clang > checking whether the C compiler works... yes > checking for C compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether /usr/bin/clang accepts -g... yes > checking for /usr/bin/clang option to accept ISO C89... unsupported > checking for style of include used by make... GNU > checking dependency style of /usr/bin/clang... gcc3 > checking how to run the C preprocessor... /usr/bin/clang -E > checking for ICC... no > checking whether /usr/bin/clang and cc understand -c and -o together... rm: > conftest.dSYM: is a directory > yes > checking if the compiler understands -Wl,-search_paths_first... yes > checking for an ANSI C-conforming const... yes > checking for working volatile... yes > checking for main in -lm... yes > checking whether time.h and sys/time.h may both be included... yes > checking for ANSI C header files... no > checking for sys/types.h... yes > checking for sys/stat.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for memory.h... yes > checking for strings.h... yes > checking for inttypes.h... yes > checking for stdint.h... yes > checking for unistd.h... yes > checking for size_t... yes > checking limits.h usability... yes > checking limits.h presence... yes > checking for limits.h... yes > checking float.h usability... no > checking float.h presence... no > checking for float.h... no > configure: error: float.h not found > Error configuring MPFR. > See above for the options passed to it, and the file > > /Users/lauve/sage-devel/local/var/tmp/sage/build/mpfr-3.1.2.p0/src/config.log > for details. > > real 0m26.664s > user 0m10.775s > sys 0m9.652s > ************************************************************************ > Error installing package mpfr-3.1.2.p0 > ************************************************************************ > Please email sage-devel (http://groups.google.com/group/sage-devel) > explaining the problem and including the relevant part of the log file > /Users/lauve/sage-devel/logs/pkgs/mpfr-3.1.2.p0.log > Describe your computer, operating system, etc. > If you want to try to fix the problem yourself, *don't* just cd to > /Users/lauve/sage-devel/local/var/tmp/sage/build/mpfr-3.1.2.p0 and type > 'make' or whatever is appropriate. > Instead, the following commands setup all environment variables > correctly and load a subshell for you to debug the error: > (cd '/Users/lauve/sage-devel/local/var/tmp/sage/build/mpfr-3.1.2.p0' && > '/Users/lauve/sage-devel/sage' --sh) > When you are done debugging, you can type "exit" to leave the subshell. > ************************************************************************ > > > > > > ~~~~~~~ > ~~~ zlib > ~~~~~~~~~~~~~~~~~~ > Found local metadata for zlib-1.2.8.p0 > Found local sources at /Users/lauve/sage-devel/upstream/zlib-1.2.8.tar.bz2 > Checksum: e63277b761e138a75f8c6a9ededb8d95198739a7 vs > e63277b761e138a75f8c6a9ededb8d95198739a7 > zlib-1.2.8.p0 > ==================================================== > Setting up build directory for zlib-1.2.8.p0 > Finished set up > **************************************************** > Host system: > Darwin weehawken.local 14.3.0 Darwin Kernel Version 14.3.0: Mon Mar 23 > 11:59:05 PDT 2015; root:xnu-2782.20.48~5/RELEASE_X86_64 x86_64 > **************************************************** > C compiler: /usr/bin/clang > C compiler version: > Apple LLVM version 6.1.0 (clang-602.0.53) (based on LLVM 3.6.0svn) > Target: x86_64-apple-darwin14.3.0 > Thread model: posix > **************************************************** > cygwin_symbols.patch > patching file win32/zlib.def > Checking for shared library support... > Building shared library libz.1.2.8.dylib with /usr/bin/clang. > Checking for off64_t... No. > Checking for fseeko... Yes. > Checking for strerror... Yes. > Checking for unistd.h... Yes. > Checking for stdarg.h... No. > Checking whether to use vs[n]printf() or s[n]printf()... using s[n]printf(). > Checking for snprintf() in stdio.h... Yes. > Checking for return value of snprintf()... Yes. > Checking for attribute(visibility) support... Yes. > /usr/bin/clang -O3 -DHAVE_HIDDEN -I. -c -o example.o test/example.c > /usr/bin/clang -O3 -DHAVE_HIDDEN -c -o adler32.o adler32.c > /usr/bin/clang -O3 -DHAVE_HIDDEN -c -o crc32.o crc32.c > In file included from test/example.c:8: > In file included from ./zlib.h:34: > ./zconf.h:427:14: fatal error: 'stdarg.h' file not found > # include <stdarg.h> /* for va_list */ > ^ > In file included from crc32.c:31: > In file included from ./zutil.h:22: > In file included from ./zlib.h:34: > ./zconf.h:427:14: fatal error: 'stdarg.h' file not found > # include <stdarg.h> /* for va_list */ > ^ > In file included from adler32.c:8: > In file included from ./zutil.h:22: > In file included from ./zlib.h:34: > ./zconf.h:427:14: fatal error: 'stdarg.h' file not found > # include <stdarg.h> /* for va_list */ > ^ > 1 error generated. > make[3]: *** [adler32.o] Error 1 > make[3]: *** Waiting for unfinished jobs.... > 1 error generated. > make[3]: 1 error*** [example.o] Error 1 > generated. > make[3]: *** [crc32.o] Error 1 > Error building zlib. > > real 0m1.231s > user 0m0.485s > sys 0m0.497s > ************************************************************************ > Error installing package zlib-1.2.8.p0 > ************************************************************************ > Please email sage-devel (http://groups.google.com/group/sage-devel) > explaining the problem and including the relevant part of the log file > /Users/lauve/sage-devel/logs/pkgs/zlib-1.2.8.p0.log > Describe your computer, operating system, etc. > If you want to try to fix the problem yourself, *don't* just cd to > /Users/lauve/sage-devel/local/var/tmp/sage/build/zlib-1.2.8.p0 and type > 'make' or whatever is appropriate. > Instead, the following commands setup all environment variables > correctly and load a subshell for you to debug the error: > (cd '/Users/lauve/sage-devel/local/var/tmp/sage/build/zlib-1.2.8.p0' && > '/Users/lauve/sage-devel/sage' --sh) > When you are done debugging, you can type "exit" to leave the subshell. > ************************************************************************ > > > > > > On Thursday, June 18, 2015 at 3:29:17 PM UTC-5, Volker Braun wrote: > The actual logs of whatever failed > > On Thursday, June 18, 2015 at 8:56:56 PM UTC+2, la...@math.luc.edu wrote: > will install Xcode and get back to you. in the meantime, did you just want a > directory listing, or the actual logs? > > weehawken:sage-devel lauve$ ls logs/pkgs/ > > bzip2-1.0.6.20140317.log mpfr-3.1.2.p0.log pkgconf-0.9.7.log > config.log mpir-2.7.0-alpha12.log zlib-1.2.8.p0.log > iconv-1.14.log patch-2.7.1.log > > > > > On Thursday, June 18, 2015 at 1:27:43 PM UTC-5, Volker Braun wrote: > I think you need to have XCode installed, even though you shouldn't have to. > > Can you also post logs (in SAGE_ROOT/logs/pkgs/) > > > On Thursday, June 18, 2015 at 7:29:56 PM UTC+2, la...@math.luc.edu wrote: > Okay... > I am now running 10.10.3. > to try to get a clean version of tools, I deleted the following three > directories: > * /Applications/Xcode.app > * /Library/Developer/CommandLineTools > * /usr/include/c++ > I ran xcode-select --install from the command line. A pop up asked me to > install. I did. > Now /Library/Developer/CommandLineTools and /usr/include/c++ have returned. > (note that I do not have XCode.app at present) > > Still, in my sage source directory, when I run make -j4, I get errors. > (Setting SAGE_KEEP_BUILT_SPKGS='yes' doesn't eliminate the problem.) > > There are errors in the packages mpfr-3.1.2.p0 and zlib-1.2.8.p0. > > In my logs, the packages seem not to be able to find files that I'm sure are > there: float.h and stdarg.h > indeed, there is some general checks that flew by earlier in the build > process to the effect, > checking float.h usability... yes > > checking float.h presence... yes > > checking for float.h... yes > Yet, mpfr cannot find it. Similarly, earlier in the 'make' process, I saw fly > by the line > checking whether <stdarg.h> exists and works... yes > > > > > > new output of gcc --version : > > Configured with: --prefix=/Library/Developer/CommandLineTools/usr > --with-gxx-include-dir=/usr/include/c++/4.2.1 > > Apple LLVM version 6.1.0 (clang-602.0.53) (based on LLVM 3.6.0svn) > > Target: x86_64-apple-darwin14.3.0 > > Thread model: posix > > > > > (note: both of the directories mentioned do exist. The files float.h and > stdarg.h exist in: > > * /Library/Developer/CommandLineTools/usr/lib/clang/6.1.0/include/ > > * /usr/include/c++/4.2.1/tr1/ > > among other places) > > > > output of xcode-select --version : > > > xcode-select version 2333 > > > > > > > output of locate stdarg.h : > > /Applications/local/include/c++/4.6.3/tr1/stdarg.h > > /Applications/local/lib/gcc/x86_64-apple-darwin10.8.0/4.6.3/include/cross-stdarg.h > > /Applications/local/lib/gcc/x86_64-apple-darwin10.8.0/4.6.3/include/stdarg.h > > /Library/Developer/CommandLineTools/Library/PrivateFrameworks/LLDB.framework/Versions/A/Resources/Clang/include/stdarg.h > > /Library/Developer/CommandLineTools/usr/lib/clang/6.1.0/include/stdarg.h > > /Library/Developer/CommandLineTools/usr/lib/llvm-gcc/4.2.1/include/stdarg.h > > /System/Library/Frameworks/Kernel.framework/Versions/A/Headers/stdarg.h > > /System/Library/Frameworks/OpenCL.framework/Versions/A/lib/clang/2.0/include/stdarg.h > > /usr/include/c++/4.2.1/tr1/stdarg.h > > > > > output of locate float.h : > > /Applications/gap4r4/src/float.h > > /Applications/local/include/c++/4.6.3/tr1/float.h > > /Applications/local/lib/gap-4.4.12/src/float.h > > /Applications/local/lib/gcc/x86_64-apple-darwin10.8.0/4.6.3/include/float.h > > /Library/Developer/CommandLineTools/Library/PrivateFrameworks/LLDB.framework/Versions/A/Resources/Clang/include/float.h > > /Library/Developer/CommandLineTools/usr/lib/clang/6.1.0/include/float.h > > /System/Library/Frameworks/OpenCL.framework/Versions/A/lib/clang/2.0/include/float.h > > /usr/include/c++/4.2.1/tr1/float.h > > > > > > > Any further ideas? > > > > > > On Wednesday, June 10, 2015 at 2:56:55 PM UTC-5, Volker Braun wrote: > Since Apple declined to fix the "rootpipe" bug in OSX 10.9 I would recommend > to upgrade to OSX 10.10 asap, effectively you don't receive security fixes > any more. > > Even then, why did you not upgrade to command line tools 6.2? They should > still run on OSX 10.9 > > > On Wednesday, June 10, 2015 at 7:43:14 PM UTC+2, la...@math.luc.edu wrote: > Volkar: > Here's more info: > weehawken:sage-git lauve$ gcc --version > > Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr > --with-gxx-include-dir=/usr/include/c++/4.2.1 > > Apple LLVM version 6.0 (clang-600.0.56) (based on LLVM 3.5svn) > > Target: x86_64-apple-darwin13.4.0 > > Thread model: posix > > > weehawken:sage-git lauve$ which gcc > > /usr/bin/gcc > > > Note: the 'prefix' it points to is not where I have installed the most recent > version of command line tools, but I moved the 'usr' folder there to > 'usr.old', created a symbolic link to '/usr' and tried again. The error > persists: "float.h not found" > > > > On Wednesday, June 10, 2015 at 10:32:30 AM UTC-5, Volker Braun wrote: > CommandLineTools for XCode 6.1.1 is old and buggy... Also, are you sure you > are using the compiler you think you are using? You can have multiple ones. > Output of gcc --version? > > > > On Wednesday, June 10, 2015 at 4:37:13 PM UTC+2, Anne Schilling wrote: > Hello, > > Aaron Lauve at Sage Days 65 is having trouble installing development version > of Sage on my Mac. > (OSX10.9.5, with CommandLineTools for XCode 6.1.1 installed) > > The error is "Error installing package mpfr-3.1.2.p0" > > Here is the tail of the log file created, which seems to point to not finding > float.h > (But it can be located on my machine with "locate float.h" from / directory.) > > ~~~~~~~ > > checking for limits.h... yes > > checking float.h usability... no > > checking float.h presence... no > > checking for float.h... no > > configure: error: float.h not found > > Error configuring MPFR. > > See above for the options passed to it, and the file > > /Users/lauve/sage-git/local/var/tmp/sage/build/mpfr-3.1.2.p0/src/config.log > > for details. > > > real 0m15.066s > > user 0m6.600s > > sys 0m5.934s > > ************************************************************************ > > Error installing package mpfr-3.1.2.p0 > > ************************************************************************ > > Please email sage-devel (http://groups.google.com/group/sage-devel) > > explaining the problem and including the relevant part of the log file > > /Users/lauve/sage-git/logs/pkgs/mpfr-3.1.2.p0.log > > Describe your computer, operating system, etc. > > If you want to try to fix the problem yourself, *don't* just cd to > > /Users/lauve/sage-git/local/var/tmp/sage/build/mpfr-3.1.2.p0 and type 'make' > or whatever is appropriate. > > Instead, the following commands setup all environment variables > > correctly and load a subshell for you to debug the error: > > (cd '/Users/lauve/sage-git/local/var/tmp/sage/build/mpfr-3.1.2.p0' && > '/Users/lauve/sage-git/sage' --sh) > > When you are done debugging, you can type "exit" to leave the subshell. > > ************************************************************************ > > Any suggestions? > > Best, > > Anne > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To post to this group, send email to sage-devel@googlegroups.com. > Visit this group at http://groups.google.com/group/sage-devel. > For more options, visit https://groups.google.com/d/optout. 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