As far as I remember, apart from the lack of POSIX compatibility on 
Windows/MSYS, the main obstacle to "natively" compile Sage on Windows 64 
were:
* PARI which assumes that sizeof(long) == sizeof(void*), there is an 
experimental branch fixing this: 
http://pari.math.u-bordeaux.fr/archives/pari-dev-1505/msg00021.html
* GAP memory allocation, no sure this is actually an issue, see 
https://groups.google.com/d/msg/sage-devel/QXy_2KMbP1k/Z3cfpCieYzgJ for 
"details".

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