Having issues building the same package. Only I get a different log file. I
always prefer building Sage from scratch for performance, but have lately
been having trouble doing so, as Sage keeps failing to build. Background:
OS: Debian 8.7, 64-bit.
Sage Version: 7.6.
HW: Lenovo ThinkPad 11e, 120GB SSD, 8GB RAM, Intel Celeron N2940, with 4
cpu cores (as evidenced by the cat /proc/cpuinfo command).
I follow the instructions for [installing from
source](http://doc.sagemath.org/html/en/installation/source.html), and I
execute the MAKE='make -j4' make command. The compile gets quite a ways
into the compile. It finishes compiling maxima, in fact, and then I get the
following error message:
Error building Sage.
The following package(s) may have failed to build (not necessarily during
this run of 'make all'):
* package: openblas-0.2.19.p0
log file:
/home/akeister/Downloads/sage-7.6/logs/pkgs/openblas-0.2.19.p0.log
build directory:
/home/akeister/Downloads/sage-7.6/local/var/tmp/sage/build/openblas-0.2.19.p0
I have attached the indicated log file, where it says to contact this
group. You can see that the issue is different from the OP, but it's still
a problem compiling that package.
Ideas?
Thanks for your time!
Cheers,
Adrian
On Wednesday, October 12, 2016 at 12:43:20 PM UTC-4, Ethan Petersen wrote:
>
> Hello all,
>
> I'm building sage on a Lenovo Thinkpad W540 with Ubuntu 16.04, and there
> was an "Error building OpenBLAS"/"Error installing package openblas-0.2.19"
> with a suggestion to email this google group with the attached log file. If
> anyone has ideas on solving this issue, please let me know!
>
> Thanks,
>
> Ethan
>
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Found local metadata for openblas-0.2.19.p0
Using cached file
/home/akeister/Downloads/sage-7.6/upstream/OpenBLAS-0.2.19.tar.gz
openblas-0.2.19.p0
====================================================
Setting up build directory for openblas-0.2.19.p0
Finished extraction
Applying patches from ../patches...
Applying ../patches/openblas-0.2.19-MAKE.patch
patching file Makefile
Applying ../patches/openblas-0.2.19-OSX_DEPLOY.patch
patching file Makefile.system
Applying ../patches/openblas-0.2.19-SMP_conditional.patch
patching file Makefile.system
Hunk #1 succeeded at 299 (offset 2 lines).
Hunk #2 succeeded at 845 (offset 2 lines).
Hunk #3 succeeded at 1046 (offset 2 lines).
Hunk #4 succeeded at 1054 (offset 2 lines).
Applying ../patches/openblas-0.2.19-utest_ldflags.patch
patching file utest/Makefile
****************************************************
Host system:
Linux Gandalf 3.16.0-4-amd64 #1 SMP Debian 3.16.39-1+deb8u2 (2017-03-07) x86_64
GNU/Linux
****************************************************
C compiler: gcc
C compiler version:
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.9/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Debian 4.9.2-10'
--with-bugurl=file:///usr/share/doc/gcc-4.9/README.Bugs
--enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr
--program-suffix=-4.9 --enable-shared --enable-linker-build-id
--libexecdir=/usr/lib --without-included-gettext --enable-threads=posix
--with-gxx-include-dir=/usr/include/c++/4.9 --libdir=/usr/lib --enable-nls
--with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug
--enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-vtable-verify
--enable-plugin --with-system-zlib --disable-browser-plugin
--enable-java-awt=gtk --enable-gtk-cairo
--with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.9-amd64/jre --enable-java-home
--with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.9-amd64
--with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.9-amd64
--with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar
--enable-objc-gc --enable-multiarch --with-arch-32=i586 --with-abi=m64
--with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic
--enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu
--target=x86_64-linux-gnu
Thread model: posix
gcc version 4.9.2 (Debian 4.9.2-10)
****************************************************
Building OpenBLAS: make USE_THREAD=0
make[3]: Entering directory
'/home/akeister/Downloads/sage-7.6/local/var/tmp/sage/build/openblas-0.2.19.p0/src'
getarch_2nd.c: In function 'main':
getarch_2nd.c:12:35: error: 'SGEMM_DEFAULT_UNROLL_M' undeclared (first use in
this function)
printf("SGEMM_UNROLL_M=%d\n", SGEMM_DEFAULT_UNROLL_M);
^
getarch_2nd.c:12:35: note: each undeclared identifier is reported only once for
each function it appears in
getarch_2nd.c:13:35: error: 'SGEMM_DEFAULT_UNROLL_N' undeclared (first use in
this function)
printf("SGEMM_UNROLL_N=%d\n", SGEMM_DEFAULT_UNROLL_N);
^
getarch_2nd.c:14:35: error: 'DGEMM_DEFAULT_UNROLL_M' undeclared (first use in
this function)
printf("DGEMM_UNROLL_M=%d\n", DGEMM_DEFAULT_UNROLL_M);
^
getarch_2nd.c:15:35: error: 'DGEMM_DEFAULT_UNROLL_N' undeclared (first use in
this function)
printf("DGEMM_UNROLL_N=%d\n", DGEMM_DEFAULT_UNROLL_N);
^
getarch_2nd.c:19:35: error: 'CGEMM_DEFAULT_UNROLL_M' undeclared (first use in
this function)
printf("CGEMM_UNROLL_M=%d\n", CGEMM_DEFAULT_UNROLL_M);
^
getarch_2nd.c:20:35: error: 'CGEMM_DEFAULT_UNROLL_N' undeclared (first use in
this function)
printf("CGEMM_UNROLL_N=%d\n", CGEMM_DEFAULT_UNROLL_N);
^
getarch_2nd.c:21:35: error: 'ZGEMM_DEFAULT_UNROLL_M' undeclared (first use in
this function)
printf("ZGEMM_UNROLL_M=%d\n", ZGEMM_DEFAULT_UNROLL_M);
^
getarch_2nd.c:22:35: error: 'ZGEMM_DEFAULT_UNROLL_N' undeclared (first use in
this function)
printf("ZGEMM_UNROLL_N=%d\n", ZGEMM_DEFAULT_UNROLL_N);
^
getarch_2nd.c:69:50: error: 'SGEMM_DEFAULT_Q' undeclared (first use in this
function)
printf("#define SLOCAL_BUFFER_SIZE\t%ld\n", (SGEMM_DEFAULT_Q *
SGEMM_DEFAULT_UNROLL_N * 4 * 1 * sizeof(float)));
^
getarch_2nd.c:70:50: error: 'DGEMM_DEFAULT_Q' undeclared (first use in this
function)
printf("#define DLOCAL_BUFFER_SIZE\t%ld\n", (DGEMM_DEFAULT_Q *
DGEMM_DEFAULT_UNROLL_N * 2 * 1 * sizeof(double)));
^
getarch_2nd.c:71:50: error: 'CGEMM_DEFAULT_Q' undeclared (first use in this
function)
printf("#define CLOCAL_BUFFER_SIZE\t%ld\n", (CGEMM_DEFAULT_Q *
CGEMM_DEFAULT_UNROLL_N * 4 * 2 * sizeof(float)));
^
getarch_2nd.c:72:50: error: 'ZGEMM_DEFAULT_Q' undeclared (first use in this
function)
printf("#define ZLOCAL_BUFFER_SIZE\t%ld\n", (ZGEMM_DEFAULT_Q *
ZGEMM_DEFAULT_UNROLL_N * 2 * 2 * sizeof(double)));
^
make[3]: *** [getarch_2nd] Error 1
Makefile:123: *** OpenBLAS: Detecting CPU failed. Please set TARGET explicitly,
e.g. make TARGET=your_cpu_target. Please read README for the detail.. Stop.
make[3]: Leaving directory
'/home/akeister/Downloads/sage-7.6/local/var/tmp/sage/build/openblas-0.2.19.p0/src'
Error building OpenBLAS
real 0m1.347s
user 0m0.696s
sys 0m0.116s
************************************************************************
Error installing package openblas-0.2.19.p0
************************************************************************
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and including the relevant part of the log file
/home/akeister/Downloads/sage-7.6/logs/pkgs/openblas-0.2.19.p0.log
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/home/akeister/Downloads/sage-7.6/local/var/tmp/sage/build/openblas-0.2.19.p0
and type 'make' or whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd
'/home/akeister/Downloads/sage-7.6/local/var/tmp/sage/build/openblas-0.2.19.p0'
&& '/home/akeister/Downloads/sage-7.6/sage' --sh)
When you are done debugging, you can type "exit" to leave the subshell.
************************************************************************
Found local metadata for openblas-0.2.19.p0
Using cached file
/home/akeister/Downloads/sage-7.6/upstream/OpenBLAS-0.2.19.tar.gz
openblas-0.2.19.p0
====================================================
Setting up build directory for openblas-0.2.19.p0
Finished extraction
Applying patches from ../patches...
Applying ../patches/openblas-0.2.19-MAKE.patch
patching file Makefile
Applying ../patches/openblas-0.2.19-OSX_DEPLOY.patch
patching file Makefile.system
Applying ../patches/openblas-0.2.19-SMP_conditional.patch
patching file Makefile.system
Hunk #1 succeeded at 299 (offset 2 lines).
Hunk #2 succeeded at 845 (offset 2 lines).
Hunk #3 succeeded at 1046 (offset 2 lines).
Hunk #4 succeeded at 1054 (offset 2 lines).
Applying ../patches/openblas-0.2.19-utest_ldflags.patch
patching file utest/Makefile
****************************************************
Host system:
Linux Gandalf 3.16.0-4-amd64 #1 SMP Debian 3.16.39-1+deb8u2 (2017-03-07) x86_64
GNU/Linux
****************************************************
C compiler: gcc
C compiler version:
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.9/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Debian 4.9.2-10'
--with-bugurl=file:///usr/share/doc/gcc-4.9/README.Bugs
--enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr
--program-suffix=-4.9 --enable-shared --enable-linker-build-id
--libexecdir=/usr/lib --without-included-gettext --enable-threads=posix
--with-gxx-include-dir=/usr/include/c++/4.9 --libdir=/usr/lib --enable-nls
--with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug
--enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-vtable-verify
--enable-plugin --with-system-zlib --disable-browser-plugin
--enable-java-awt=gtk --enable-gtk-cairo
--with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.9-amd64/jre --enable-java-home
--with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.9-amd64
--with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.9-amd64
--with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar
--enable-objc-gc --enable-multiarch --with-arch-32=i586 --with-abi=m64
--with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic
--enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu
--target=x86_64-linux-gnu
Thread model: posix
gcc version 4.9.2 (Debian 4.9.2-10)
****************************************************
Building OpenBLAS: make USE_THREAD=0
make[2]: Entering directory
'/home/akeister/Downloads/sage-7.6/local/var/tmp/sage/build/openblas-0.2.19.p0/src'
getarch_2nd.c: In function 'main':
getarch_2nd.c:12:35: error: 'SGEMM_DEFAULT_UNROLL_M' undeclared (first use in
this function)
printf("SGEMM_UNROLL_M=%d\n", SGEMM_DEFAULT_UNROLL_M);
^
getarch_2nd.c:12:35: note: each undeclared identifier is reported only once for
each function it appears in
getarch_2nd.c:13:35: error: 'SGEMM_DEFAULT_UNROLL_N' undeclared (first use in
this function)
printf("SGEMM_UNROLL_N=%d\n", SGEMM_DEFAULT_UNROLL_N);
^
getarch_2nd.c:14:35: error: 'DGEMM_DEFAULT_UNROLL_M' undeclared (first use in
this function)
printf("DGEMM_UNROLL_M=%d\n", DGEMM_DEFAULT_UNROLL_M);
^
getarch_2nd.c:15:35: error: 'DGEMM_DEFAULT_UNROLL_N' undeclared (first use in
this function)
printf("DGEMM_UNROLL_N=%d\n", DGEMM_DEFAULT_UNROLL_N);
^
getarch_2nd.c:19:35: error: 'CGEMM_DEFAULT_UNROLL_M' undeclared (first use in
this function)
printf("CGEMM_UNROLL_M=%d\n", CGEMM_DEFAULT_UNROLL_M);
^
getarch_2nd.c:20:35: error: 'CGEMM_DEFAULT_UNROLL_N' undeclared (first use in
this function)
printf("CGEMM_UNROLL_N=%d\n", CGEMM_DEFAULT_UNROLL_N);
^
getarch_2nd.c:21:35: error: 'ZGEMM_DEFAULT_UNROLL_M' undeclared (first use in
this function)
printf("ZGEMM_UNROLL_M=%d\n", ZGEMM_DEFAULT_UNROLL_M);
^
getarch_2nd.c:22:35: error: 'ZGEMM_DEFAULT_UNROLL_N' undeclared (first use in
this function)
printf("ZGEMM_UNROLL_N=%d\n", ZGEMM_DEFAULT_UNROLL_N);
^
getarch_2nd.c:69:50: error: 'SGEMM_DEFAULT_Q' undeclared (first use in this
function)
printf("#define SLOCAL_BUFFER_SIZE\t%ld\n", (SGEMM_DEFAULT_Q *
SGEMM_DEFAULT_UNROLL_N * 4 * 1 * sizeof(float)));
^
getarch_2nd.c:70:50: error: 'DGEMM_DEFAULT_Q' undeclared (first use in this
function)
printf("#define DLOCAL_BUFFER_SIZE\t%ld\n", (DGEMM_DEFAULT_Q *
DGEMM_DEFAULT_UNROLL_N * 2 * 1 * sizeof(double)));
^
getarch_2nd.c:71:50: error: 'CGEMM_DEFAULT_Q' undeclared (first use in this
function)
printf("#define CLOCAL_BUFFER_SIZE\t%ld\n", (CGEMM_DEFAULT_Q *
CGEMM_DEFAULT_UNROLL_N * 4 * 2 * sizeof(float)));
^
getarch_2nd.c:72:50: error: 'ZGEMM_DEFAULT_Q' undeclared (first use in this
function)
printf("#define ZLOCAL_BUFFER_SIZE\t%ld\n", (ZGEMM_DEFAULT_Q *
ZGEMM_DEFAULT_UNROLL_N * 2 * 2 * sizeof(double)));
^
make[2]: *** [getarch_2nd] Error 1
Makefile:123: *** OpenBLAS: Detecting CPU failed. Please set TARGET explicitly,
e.g. make TARGET=your_cpu_target. Please read README for the detail.. Stop.
make[2]: Leaving directory
'/home/akeister/Downloads/sage-7.6/local/var/tmp/sage/build/openblas-0.2.19.p0/src'
Error building OpenBLAS
real 0m1.083s
user 0m0.812s
sys 0m0.124s
************************************************************************
Error installing package openblas-0.2.19.p0
************************************************************************
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and including the relevant part of the log file
/home/akeister/Downloads/sage-7.6/logs/pkgs/openblas-0.2.19.p0.log
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/home/akeister/Downloads/sage-7.6/local/var/tmp/sage/build/openblas-0.2.19.p0
and type 'make' or whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd
'/home/akeister/Downloads/sage-7.6/local/var/tmp/sage/build/openblas-0.2.19.p0'
&& '/home/akeister/Downloads/sage-7.6/sage' --sh)
When you are done debugging, you can type "exit" to leave the subshell.
************************************************************************
