I did reinstall/update xcode and command line tools. I then ran ./sage -f python2 and make and I believe it's working correctly now. At least the ./sage appears to run normally and I was able to checkout a branch. Thanks for your help!
On Fri, Aug 9, 2019 at 10:38 AM E. Madison Bray <erik.m.b...@gmail.com> wrote: > On Wed, Aug 7, 2019 at 8:54 PM Dima Pasechnik <dimp...@gmail.com> wrote: > > > > On Wed, Aug 7, 2019 at 9:29 PM Holley Friedlander <holley...@gmail.com> > wrote: > > > > > > I tried > > > > > > ls /usr/lib/system/libsystem_darwin.dylib > > > > > > but I get the message "no such file or directory". Maybe I am looking > in the wrong place? Thanks. > > > > no, this means that this fix didn't work. > > > > Perhaps you ought to reinstall/upgrade Command Line Tools for Xcode > > or/and Xcode itself. > > Couldn't this be a reprise of https://trac.sagemath.org/ticket/27631 ? > > That is, perhaps it should be assuming that /usr is the correct prefix > in which to search for libsystem_darwin.dylib, and it should be doing > some -isysroot stuff with sysconfig.get_config_var('Py_MACOS_SYSROOT') > like in your patch? It seems likely that sqlite would be affected by > this too, though for some reason we hadn't noticed? > > Incidentally, Ned Deily's fix [1] for this has finally been merged as > of a few weeks ago, and has been backported [2] to Python 2.7. > Perhaps we should try swapping out your patch (not that I don't like > it!) for the now official fix... > > [1] https://github.com/python/cpython/pull/13773 > [2] https://github.com/python/cpython/pull/14256 > > > > > On Wednesday, August 7, 2019 at 1:21:41 PM UTC-5, Dima Pasechnik wrote: > > >> > > >> On Wed, Aug 7, 2019 at 9:15 PM Holley Friedlander <holl...@gmail.com> > wrote: > > >> > > > >> > Thank you. So I ran the line you suggested below. Is there a way to > check it or should I retype "make" now? This is the warning from my > original error message. Should I change this environment variable? How do I > do this? Is it something I type after make? I apologize, I am new to this. > > >> > > >> you can check if the fix did what it shoud do, i.e. installed > > >> /usr/lib/system/libsystem_darwin.dylib > > >> > > >> In the terminal, type > > >> > > >> ls /usr/lib/system/libsystem_darwin.dylib > > >> > > >> and check that it outputs the file name > > >> Assuming it worked, to speed things up, > > >> you need to rebuild python2 package, by e.g. > > >> > > >> ./sage -f python2 > > >> > > >> and then run > > >> > > >> make > > >> > > >> > > >> > > >> > > > >> > The build directory may contain configuration files and other > potentially > > >> > > > >> > helpful information. WARNING: if you now run 'make' again, the build > > >> > > > >> > directory will, by default, be deleted. Set the environment variable > > >> > > > >> > SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. > > >> > > > >> > > > >> > On Wednesday, August 7, 2019 at 12:14:18 PM UTC-5, Dima Pasechnik > wrote: > > >> >> > > >> >> indeed, you will see in the log > > >> >> > > >> >> ld: file not found: /usr/lib/system/libsystem_darwin.dylib for > > >> >> architecture x86_64 > > >> >> > > >> >> which indicates that your Xcode installation is somewhat broken. > > >> >> Internet says you'd need to run > > >> >> > > >> >> sudo xcode-select -s /Library/Developer/CommandLineTools > > >> >> > > >> >> to fix this. (YMMV, naturally...) > > >> >> > > >> >> > > >> >> On Wed, Aug 7, 2019 at 6:15 PM Holley Friedlander < > holl...@gmail.com> wrote: > > >> >> > > > >> >> > Okay here it is. I had to compress it as it was too large to > attach otherwise. > > >> >> > > > >> >> > On Wednesday, August 7, 2019 at 10:06:45 AM UTC-5, Dima > Pasechnik wrote: > > >> >> >> > > >> >> >> So the sqlite module of Python2 was not built correctly, it > seems. Please post > > >> >> >> logs/pkgs/python2-2.7.15.p1.log > > >> >> >> > > >> >> >> On Wed, Aug 7, 2019 at 5:27 PM Holley Friedlander < > holl...@gmail.com> wrote: > > >> >> >> > > > >> >> >> > Thank you. I tried the ./sage and this is the crash report > (attached). > > >> >> >> > > > >> >> >> > On Wednesday, August 7, 2019 at 9:13:38 AM UTC-5, E. Madison > Bray wrote: > > >> >> >> >> > > >> >> >> >> Hello, > > >> >> >> >> > > >> >> >> >> This happens in general because the sagenb package uses sage > itself as > > >> >> >> >> a dependency, so once the build process gets to installing > sagenb > > >> >> >> >> (specifically building its documentation) if something is > wrong with > > >> >> >> >> the *sage* build your build will fail here. > > >> >> >> >> > > >> >> >> >> There have been many cases of this. Just to pick one at > random: > > >> >> >> >> https://trac.sagemath.org/ticket/26686 > > >> >> >> >> > > >> >> >> >> The question is what is wrong with your sage build. Try > running > > >> >> >> >> > > >> >> >> >> $ ./sage > > >> >> >> >> > > >> >> >> >> directly. Because by the time the build process is > installing sagenb, > > >> >> >> >> the core sage library should already be built and working. > If not, it > > >> >> >> >> will crash, and you'll get a crash log (and hopefully a more > useful > > >> >> >> >> one, at that). > > >> >> >> >> > > >> >> >> >> On Wed, Aug 7, 2019 at 3:52 PM Holley Friedlander < > holl...@gmail.com> wrote: > > >> >> >> >> > > > >> >> >> >> > I had an error building sage. The problem was with the > package sagenb-1.1.2. I am attaching my log file. Here is what I believe to > be the relevant portion. I am on OS v 10.12.6. I found another thread that > suggested this may have something to do with Python 3, but I am not sure if > it is the same issue and I did not understand the fix. I installed Command > Line Tools as prerequisite to starting the build. Suggestions on how to > resolve? > > >> >> >> >> > > > >> >> >> >> > Exception occurred: > > >> >> >> >> > File "sage/misc/lazy_import.pyx", line 218, in > sage.misc.lazy_import.LazyImport._get_object > (build/cythonized/sage/misc/lazy_import.c:2502) > > >> >> >> >> > raise RuntimeError(f"resolving lazy import > {self._name} during startup") > > >> >> >> >> > RuntimeError: resolving lazy import dumps during startup > > >> >> >> >> > The full traceback has been saved in > /var/folders/r7/bx5nmhtx23bgx6lhgxlbfj3w0000gn/T/sphinx-err-3aMcJb.log, if > you want to report the issue to the developers. > > >> >> >> >> > Please also report this if it was a user error, so that a > better error message can be provided next time. > > >> >> >> >> > A bug report can be filed in the tracker at < > https://github.com/sphinx-doc/sphinx/issues>. Thanks! > > >> >> >> >> > make[4]: *** [html] Error 2 > > >> >> >> >> > > ******************************************************************************** > > >> >> >> >> > Error building the documentation > > >> >> >> >> > > ******************************************************************************** > > >> >> >> >> > > > >> >> >> >> > real 0m7.502s > > >> >> >> >> > user 0m5.810s > > >> >> >> >> > sys 0m2.151s > > >> >> >> >> > > ************************************************************************ > > >> >> >> >> > Error installing package sagenb-1.1.2 > > >> >> >> >> > > ************************************************************************ > > >> >> >> >> > > > >> >> >> >> > -- > > >> >> >> >> > You received this message because you are subscribed to > the Google Groups "sage-devel" group. > > >> >> >> >> > To unsubscribe from this group and stop receiving emails > from it, send an email to sage-...@googlegroups.com. > > >> >> >> >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/db4dd9c1-b83f-49d9-b80e-cd9d8b60f4cb%40googlegroups.com > . > > >> >> >> > > > >> >> >> > -- > > >> >> >> > You received this message because you are subscribed to the > Google Groups "sage-devel" group. > > >> >> >> > To unsubscribe from this group and stop receiving emails from > it, send an email to sage-...@googlegroups.com. > > >> >> >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/debf8df5-5e74-4cf7-8603-c657d4831c66%40googlegroups.com > . > > >> >> > > > >> >> > -- > > >> >> > You received this message because you are subscribed to the > Google Groups "sage-devel" group. > > >> >> > To unsubscribe from this group and stop receiving emails from > it, send an email to sage-...@googlegroups.com. > > >> >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/66441a0a-8176-480d-8b41-69914219f116%40googlegroups.com > . > > >> > > > >> > -- > > >> > You received this message because you are subscribed to the Google > Groups "sage-devel" group. > > >> > To unsubscribe from this group and stop receiving emails from it, > send an email to sage-...@googlegroups.com. > > >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/e80dc92f-35a7-4bf4-aa37-1ed01328d1ab%40googlegroups.com > . > > > > > > -- > > > You received this message because you are subscribed to the Google > Groups "sage-devel" group. > > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-devel+unsubscr...@googlegroups.com. > > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/99b9970b-720b-406b-866f-91c321f99ecd%40googlegroups.com > . > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-devel" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-devel+unsubscr...@googlegroups.com. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/CAAWYfq0%2BPme4qQ3Dq5-HuPaHnNyZDcGmX1Cs3%3D9WuN81s%3DyngQ%40mail.gmail.com > . > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/CAOTD34aWKveQ38J6jp9cTky84RQ0sdBopBbhccfTPO%2B6KKmkbg%40mail.gmail.com > . > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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