On Wed, 16 May 2018, 16:26 Erik Bray, <erik.m.b...@gmail.com> wrote: > On Wed, May 16, 2018 at 9:56 AM, John Cremona <john.crem...@gmail.com> > wrote: > > I started to build this yesterday after pulling from trac into a place > where > > beta0 had already built OK. This morning I find the lines > > > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > [scipy-0.19.1] Skipping scipy as it is not installed. > > > > being repeated for ever. I have left that going in case someone wants to > > see any log files. > > I'm not sure, but I think this might be pip-related. I think Jeroen > mentioned something about this to me a couple weeks ago. Is it > possible you upgraded the pip in your Sage install? > > Yes I did! I had installed some stuff needed for LMFDB using sage -i pip > instal ... and it told me my pip was not the most recent and should be > upgraded, so I did. >
What should I do? > > > > > > On 16 May 2018 at 08:44, Henri Girard <henri.gir...@gmail.com> wrote: > >> > >> Bionic 18.04 AMD x8 64 bits, compile perfect. I started from fresh git > >> sage because upgrading from 8.2 failed. It couldn't find many libs. By > the > >> way I found my crash problem while compiling : I had to config the bios > >> allowing warmer processing. > >> > >> > >> Le 15/05/2018 à 21:24, Sébastien Labbé a écrit : > >> > >> On Ubuntu 16.04, the command `./sage -t -p --all --long > >> --optional=sage,optional,external` finishes with: > >> > >> ---------------------------------------------------------------------- > >> sage -t --long src/sage/coding/code_constructions.py # 1 doctest failed > >> ---------------------------------------------------------------------- > >> Total time for all tests: 1821.3 seconds > >> cpu time: 11639.5 seconds > >> cumulative wall time: 14059.4 seconds > >> External software detected for doctesting: gurobi,latex > >> Traceback (most recent call last): > >> File "/home/slabbe/GitBox/sage/src/bin/sage-runtests", line 127, in > >> <module> > >> err = DC.run() > >> File > >> > "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py", > >> line 1176, in run > >> + ','.join(available_software.seen())) > >> File > >> > "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py", > >> line 583, in log > >> self.logger.write(s + end) > >> File > >> > "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py", > >> line 250, in write > >> f.write(x) > >> ValueError: I/O operation on closed file > >> > >> > >> The code_construction error is copied below (I can not reproduce it) : > >> > >> > >> > >> sage -t --long src/sage/coding/code_constructions.py > >> ********************************************************************** > >> File "src/sage/coding/code_constructions.py", line 624, in > >> sage.coding.code_constructions.QuadraticResidueCodeOddPair > >> Failed example: > >> codes.QuadraticResidueCodeOddPair(17, GF(13)) > >> Exception raised: > >> Traceback (most recent call last): > >> File > >> > "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/forker.py", > >> line 562, in _run > >> self.compile_and_execute(example, compiler, test.globs) > >> File > >> > "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/forker.py", > >> line 972, in compile_and_execute > >> exec(compiled, globs) > >> File "<doctest > >> sage.coding.code_constructions.QuadraticResidueCodeOddPair[0]>", line > 1, in > >> <module> > >> codes.QuadraticResidueCodeOddPair(Integer(17), GF(Integer(13))) > >> File > >> > "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/coding/code_constructions.py", > >> line 666, in Quadratic > >> ResidueCodeOddPair > >> return DuadicCodeOddPair(F,Q,N) > >> File > >> > "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/coding/code_constructions.py", > >> line 425, in DuadicCod > >> eOddPair > >> gg1 = P2(coeffs1) > >> File "sage/structure/parent.pyx", line 920, in > >> sage.structure.parent.Parent.__call__ > (build/cythonized/sage/structure/paren > >> t.c:9734) > >> return mor._call_(x) > >> File "sage/structure/coerce_maps.pyx", line 145, in > >> sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cytho > >> nized/sage/structure/coerce_maps.c:4555) > >> raise > >> File "sage/structure/coerce_maps.pyx", line 140, in > >> sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cytho > >> nized/sage/structure/coerce_maps.c:4423) > >> return C._element_constructor(x) > >> File > >> > "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/rings/polynomial/polynomial_ring.py", > >> line 404, in _e > >> lement_constructor_ > >> return C(self, x, check=check, is_gen=False, > construct=construct) > >> File "sage/rings/polynomial/polynomial_zmod_flint.pyx", line 100, > in > >> sage.rings.polynomial.polynomial_zmod_flint.Polynomial > >> _zmod_flint.__init__ > >> (build/cythonized/sage/rings/polynomial/polynomial_zmod_flint.cpp:14358) > >> lst = [k(i) for i in x] > >> File "sage/structure/parent.pyx", line 920, in > >> sage.structure.parent.Parent.__call__ > (build/cythonized/sage/structure/paren > >> t.c:9734) > >> return mor._call_(x) > >> File "sage/rings/finite_rings/hom_prime_finite_field.pyx", line > 46, > >> in sage.rings.finite_rings.hom_prime_finite_field.Secti > >> onFiniteFieldHomomorphism_prime._call_ > >> (build/cythonized/sage/rings/finite_rings/hom_prime_finite_field.c:3457) > >> raise ValueError("%s is not in the image of %s" % (x, > >> self._inverse)) > >> ValueError: 3*z^3 + 2*z^2 + 8*z + 1 is not in the image of (map > >> internal to coercion system -- copy before use) > >> Ring morphism: > >> From: Finite Field of size 13 > >> To: Finite Field in z of size 13^4 > >> ********************************************************************** > >> 1 item had failures: > >> 1 of 13 in > sage.coding.code_constructions.QuadraticResidueCodeOddPair > >> [146 tests, 1 failure, 2.56 s] > >> > >> -- > >> You received this message because you are subscribed to the Google > Groups > >> "sage-release" group. > >> To unsubscribe from this group and stop receiving emails from it, send > an > >> email to sage-release+unsubscr...@googlegroups.com. > >> To post to this group, send email to sage-release@googlegroups.com. > >> Visit this group at https://groups.google.com/group/sage-release. > >> For more options, visit https://groups.google.com/d/optout. > >> > >> > >> -- > >> You received this message because you are subscribed to the Google > Groups > >> "sage-release" group. > >> To unsubscribe from this group and stop receiving emails from it, send > an > >> email to sage-release+unsubscr...@googlegroups.com. > >> To post to this group, send email to sage-release@googlegroups.com. > >> Visit this group at https://groups.google.com/group/sage-release. > >> For more options, visit https://groups.google.com/d/optout. > > > > > > -- > > You received this message because you are subscribed to the Google Groups > > "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send an > > email to sage-release+unsubscr...@googlegroups.com. > > To post to this group, send email to sage-release@googlegroups.com. > > Visit this group at https://groups.google.com/group/sage-release. > > For more options, visit https://groups.google.com/d/optout. > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To post to this group, send email to sage-release@googlegroups.com. > Visit this group at https://groups.google.com/group/sage-release. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "sage-release" group. 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