pip should be able to uninstall itself so
sage -pip uninstall pip
sage -i pip
should give you the standard sage version of pip back. I did not test this,
so use at your own risk.
On Wednesday, 16 May 2018 17:33:50 UTC+2, John Cremona wrote:
>
>
>
> On Wed, 16 May 2018, 16:26 Erik Bray, <erik....@gmail.com <javascript:>>
> wrote:
>
>> On Wed, May 16, 2018 at 9:56 AM, John Cremona <john.c...@gmail.com
>> <javascript:>> wrote:
>> > I started to build this yesterday after pulling from trac into a place
>> where
>> > beta0 had already built OK. This morning I find the lines
>> >
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> >
>> > being repeated for ever. I have left that going in case someone wants
>> to
>> > see any log files.
>>
>> I'm not sure, but I think this might be pip-related. I think Jeroen
>> mentioned something about this to me a couple weeks ago. Is it
>> possible you upgraded the pip in your Sage install?
>>
>>
> Yes I did! I had installed some stuff needed for LMFDB using sage -i pip
>> instal ... and it told me my pip was not the most recent and should be
>> upgraded, so I did.
>>
>
> What should I do?
>
>
>>
>>
>>
>>
>> > On 16 May 2018 at 08:44, Henri Girard <henri....@gmail.com
>> <javascript:>> wrote:
>> >>
>> >> Bionic 18.04 AMD x8 64 bits, compile perfect. I started from fresh git
>> >> sage because upgrading from 8.2 failed. It couldn't find many libs. By
>> the
>> >> way I found my crash problem while compiling : I had to config the bios
>> >> allowing warmer processing.
>> >>
>> >>
>> >> Le 15/05/2018 à 21:24, Sébastien Labbé a écrit :
>> >>
>> >> On Ubuntu 16.04, the command `./sage -t -p --all --long
>> >> --optional=sage,optional,external` finishes with:
>> >>
>> >> ----------------------------------------------------------------------
>> >> sage -t --long src/sage/coding/code_constructions.py # 1 doctest
>> failed
>> >> ----------------------------------------------------------------------
>> >> Total time for all tests: 1821.3 seconds
>> >> cpu time: 11639.5 seconds
>> >> cumulative wall time: 14059.4 seconds
>> >> External software detected for doctesting: gurobi,latex
>> >> Traceback (most recent call last):
>> >> File "/home/slabbe/GitBox/sage/src/bin/sage-runtests", line 127, in
>> >> <module>
>> >> err = DC.run()
>> >> File
>> >>
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
>> >> line 1176, in run
>> >> + ','.join(available_software.seen()))
>> >> File
>> >>
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
>> >> line 583, in log
>> >> self.logger.write(s + end)
>> >> File
>> >>
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
>> >> line 250, in write
>> >> f.write(x)
>> >> ValueError: I/O operation on closed file
>> >>
>> >>
>> >> The code_construction error is copied below (I can not reproduce it) :
>> >>
>> >>
>> >>
>> >> sage -t --long src/sage/coding/code_constructions.py
>> >> **********************************************************************
>> >> File "src/sage/coding/code_constructions.py", line 624, in
>> >> sage.coding.code_constructions.QuadraticResidueCodeOddPair
>> >> Failed example:
>> >> codes.QuadraticResidueCodeOddPair(17, GF(13))
>> >> Exception raised:
>> >> Traceback (most recent call last):
>> >> File
>> >>
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/forker.py",
>> >> line 562, in _run
>> >> self.compile_and_execute(example, compiler, test.globs)
>> >> File
>> >>
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/forker.py",
>> >> line 972, in compile_and_execute
>> >> exec(compiled, globs)
>> >> File "<doctest
>> >> sage.coding.code_constructions.QuadraticResidueCodeOddPair[0]>", line
>> 1, in
>> >> <module>
>> >> codes.QuadraticResidueCodeOddPair(Integer(17), GF(Integer(13)))
>> >> File
>> >>
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/coding/code_constructions.py",
>> >> line 666, in Quadratic
>> >> ResidueCodeOddPair
>> >> return DuadicCodeOddPair(F,Q,N)
>> >> File
>> >>
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/coding/code_constructions.py",
>> >> line 425, in DuadicCod
>> >> eOddPair
>> >> gg1 = P2(coeffs1)
>> >> File "sage/structure/parent.pyx", line 920, in
>> >> sage.structure.parent.Parent.__call__
>> (build/cythonized/sage/structure/paren
>> >> t.c:9734)
>> >> return mor._call_(x)
>> >> File "sage/structure/coerce_maps.pyx", line 145, in
>> >> sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cytho
>> >> nized/sage/structure/coerce_maps.c:4555)
>> >> raise
>> >> File "sage/structure/coerce_maps.pyx", line 140, in
>> >> sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cytho
>> >> nized/sage/structure/coerce_maps.c:4423)
>> >> return C._element_constructor(x)
>> >> File
>> >>
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/rings/polynomial/polynomial_ring.py",
>> >> line 404, in _e
>> >> lement_constructor_
>> >> return C(self, x, check=check, is_gen=False,
>> construct=construct)
>> >> File "sage/rings/polynomial/polynomial_zmod_flint.pyx", line
>> 100, in
>> >> sage.rings.polynomial.polynomial_zmod_flint.Polynomial
>> >> _zmod_flint.__init__
>> >>
>> (build/cythonized/sage/rings/polynomial/polynomial_zmod_flint.cpp:14358)
>> >> lst = [k(i) for i in x]
>> >> File "sage/structure/parent.pyx", line 920, in
>> >> sage.structure.parent.Parent.__call__
>> (build/cythonized/sage/structure/paren
>> >> t.c:9734)
>> >> return mor._call_(x)
>> >> File "sage/rings/finite_rings/hom_prime_finite_field.pyx", line
>> 46,
>> >> in sage.rings.finite_rings.hom_prime_finite_field.Secti
>> >> onFiniteFieldHomomorphism_prime._call_
>> >>
>> (build/cythonized/sage/rings/finite_rings/hom_prime_finite_field.c:3457)
>> >> raise ValueError("%s is not in the image of %s" % (x,
>> >> self._inverse))
>> >> ValueError: 3*z^3 + 2*z^2 + 8*z + 1 is not in the image of (map
>> >> internal to coercion system -- copy before use)
>> >> Ring morphism:
>> >> From: Finite Field of size 13
>> >> To: Finite Field in z of size 13^4
>> >> **********************************************************************
>> >> 1 item had failures:
>> >> 1 of 13 in
>> sage.coding.code_constructions.QuadraticResidueCodeOddPair
>> >> [146 tests, 1 failure, 2.56 s]
>> >>
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