you probably didn't update sage for a while there. make distclean ?
On Monday, February 26, 2018 at 10:12:31 AM UTC, mforets wrote: > > Hello, > In a Mac OSX 10.11.6 with Xcode 8.2.1, compiling sage 8.2.beta6 from > sources i get the error message below: > > $ make > /Applications/Xcode.app/Contents/Developer/usr/bin/make > build/make/Makefile --stop > ./bootstrap -d > rm -rf config configure build/make/Makefile-auto.in > configure.ac:390: installing 'config/compile' > configure.ac:105: installing 'config/config.guess' > configure.ac:105: installing 'config/config.sub' > configure.ac:68: installing 'config/install-sh' > configure.ac:68: installing 'config/missing' > rm -f config.log > mkdir -p logs/pkgs > ln -s logs/pkgs/config.log config.log > running CONFIG_SHELL=/bin/sh /bin/sh ./configure --no-create --no-recursion > checking for a BSD-compatible install... > /usr/local/opt/coreutils/libexec/gnubin/install -c > checking whether build environment is sane... yes > checking for a thread-safe mkdir -p... > /usr/local/opt/coreutils/libexec/gnubin/mkdir -p > checking for gawk... gawk > checking whether make sets $(MAKE)... yes > checking whether make supports nested variables... yes > checking whether to enable maintainer-specific portions of Makefiles... yes > checking for root user... no > checking build system type... x86_64-apple-darwin15.6.0 > checking host system type... x86_64-apple-darwin15.6.0 > checking for ar... yes > checking for m4... yes > checking for ranlib... yes > checking for strip... yes > checking for GNU or BSD tar... /usr/bin/tar > checking for GNU make... /usr/bin/make > checking for latex... yes > checking for perl... /usr/bin/perl > checking for Perl version 5.8.0 or later... yes > checking for git... /usr/bin/git > checking for yasm... no > dyld: Library not loaded: /usr/local/opt/mpfr/lib/libmpfr.4.dylib > Referenced from: /usr/local/bin/awk > Reason: image not found > local/bin/sage-env: line 339: [: -ge: unary operator expected > <built-in>: error: unknown value '10.-4' of -mmacosx-version-min > conftest.cpp:2:6: error: 'inf' does not name a type > auto inf = 1.0 / std::complex<double>(); > ^ > configure: Installing GCC because installed g++ is broken > checking for gcc... gcc > checking whether the C compiler works... yes > checking for C compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc accepts -g... yes > checking for gcc option to accept ISO C89... none needed > checking whether gcc understands -c and -o together... yes > checking for style of include used by make... GNU > checking dependency style of gcc... none > checking how to run the C preprocessor... gcc -E > checking for g++... g++ > checking whether we are using the GNU C++ compiler... yes > checking whether g++ accepts -g... yes > checking dependency style of g++... none > checking for gfortran... gfortran > checking whether we are using the GNU Fortran compiler... yes > checking whether gfortran accepts -g... yes > checking for C compiler vendor... clang > checking for gcc... gcc > checking whether we are using the GNU Objective C compiler... yes > checking whether gcc accepts -g... yes > checking dependency style of gcc... none > checking for g++... g++ > checking whether we are using the GNU Objective C++ compiler... yes > checking whether g++ accepts -g... yes > checking dependency style of g++... none > checking for curl 7.22... /usr/bin/curl > checking for grep that handles long lines and -e... /usr/bin/grep > checking for egrep... /usr/bin/grep -E > checking for ANSI C header files... yes > checking for sys/types.h... yes > checking for sys/stat.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for memory.h... yes > checking for strings.h... yes > checking for inttypes.h... yes > checking for stdint.h... yes > checking for unistd.h... yes > checking curl/curl.h usability... yes > checking curl/curl.h presence... yes > checking for curl/curl.h... yes > checking how to run the C++ preprocessor... g++ -E > checking complex.h usability... yes > checking complex.h presence... yes > checking for complex.h... yes > checking whether g++ supports C++11 features by default... no > checking whether g++ supports C++11 features with -std=gnu++11... yes > checking for gcc option to accept ISO C99... none needed > checking for Fortran flag needed to accept free-form source... -ffree-form > checking for sqrt in -lm... yes > *************************************************** > *************************************************** > You are using OS X Lion (or later). > You are strongly advised to install Apple's latest Xcode > unless you already have it. You can install this using > the App Store. Also, make sure you install Xcode's > Command Line Tools -- see Sage's README.txt. > configure: error: "found MacPorts in /opt/local/bin/port. Either: > (1) rename /opt/local and /sw, or > (2) change PATH and DYLD_LIBRARY_PATH > (Once Sage is built, you can restore them.) > If you would like to try to build Sage anyway (to help porting), > export the variable 'SAGE_PORT' to something non-empty. > make[1]: *** [build/make/Makefile] Error 1 > make: *** [all] Error 2 > > I didn't really understand option (1) -- rename it to anything? Other > things won't break? > > For (2), the environment variables are: > > $ echo $DYLD_LIBRARY_PATH > /Users/forets/Tools/spaceex_src/sspaceex_local/lib/ > > $ echo $PATH > > /opt/local/bin:/opt/local/sbin:/Users/forets/Library/Python/2.7/bin/:/Users/forets/.rbenv/shims:/Applications/usr/bin:/Applications/Julia-0.6.app/Contents/Resources/julia/bin/:/Users/forets/Projects/OCRG/ocrg_git/:/Users/forets/Tools/spaceex_src/sspaceex/Release:/Applications/MATLAB_R2016a.app/bin:~/Tools/sage-master:/Library/Frameworks/Python.framework/Versions/3.5/bin:/usr/local/opt/coreutils/libexec/gnubin:/usr/local/bin:/usr/local/bin:/Library/Frameworks/Python.framework/Versions/3.5/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Library/TeX/texbin > > I tried to $ unset DYLD_LIBRARY_PATH , and to $ export PATH= .... > (removing the paths /opt/local/bin and /opt/local/sbin). After these > changes, now i get: > > $ make > /Applications/Xcode.app/Contents/Developer/usr/bin/make > build/make/Makefile --stop > make[1]: `build/make/Makefile' is up to date. > build/bin/sage-logger \ > "cd build/make && ./install 'all'" logs/install.log > *** ALL ENVIRONMENT VARIABLES BEFORE BUILD: *** > Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.B1SYzE4DrX/Render > CARLIN_REACH_ROOT=/Users/forets/Projects/nliftZonotopes > CONFIGURED_CC=gcc > CONFIGURED_CXX=g++ > CONFIGURED_FC=gfortran > CONFIGURED_OBJC=@OBJ@ > CONFIGURED_OBJCXX=g++ > CORA_ROOT=/Users/forets/Tools/CORA_2016_orig > DISPLAY=/private/tmp/com.apple.launchd.vkRKLUhZIY/org.macosforge.xquartz:0 > DYLD_LIBRARY_PATH=/Users/forets/Tools/spaceex_src/sspaceex_local/lib/ > GRB_LICENSE_FILE=/Users/forets/gurobi.lic > HOME=/Users/forets > LC_ALL=en_US.UTF-8 > LC_CTYPE=UTF-8 > LOGNAME=forets > MAKE=make > MAKEFLAGS= V=1 > MAKELEVEL=1 > MANPATH=/opt/local/share/man: > MFLAGS= > > PATH=/Users/forets/sage-src/sage/build/bin:/Users/forets/sage-src/sage/src/bin:/Users/forets/sage-src/sage/local/bin:/Users/forets/Library/Python/2.7/bin/:/Users/forets/.rbenv/shims:/Applications/usr/bin:/Applications/Julia-0.6.app/Contents/Resources/julia/bin/:/Users/forets/Projects/OCRG/ocrg_git/:/Users/forets/Tools/spaceex_src/sspaceex/Release:/Applications/MATLAB_R2016a.app/bin:/Users/forets/Tools/sage-master:/Library/Frameworks/Python.framework/Versions/3.5/bin:/usr/local/opt/coreutils/libexec/gnubin:/usr/local/bin:/usr/local/bin:/Library/Frameworks/Python.framework/Versions/3.5/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Library/TeX/texbin > PWD=/Users/forets/sage-src/sage/build/make > PYTHONPATH=/Users/forets/sage-src/sage/local > RBENV_SHELL=bash > SAGE_EXTCODE=/Users/forets/sage-src/sage/local/share/sage/ext > SAGE_LOCAL=/Users/forets/sage-src/sage/local > SAGE_LOGS=/Users/forets/sage-src/sage/logs/pkgs > > SAGE_ORIG_PATH=/Users/forets/Library/Python/2.7/bin/:/Users/forets/.rbenv/shims:/Applications/usr/bin:/Applications/Julia-0.6.app/Contents/Resources/julia/bin/:/Users/forets/Projects/OCRG/ocrg_git/:/Users/forets/Tools/spaceex_src/sspaceex/Release:/Applications/MATLAB_R2016a.app/bin:/Users/forets/Tools/sage-master:/Library/Frameworks/Python.framework/Versions/3.5/bin:/usr/local/opt/coreutils/libexec/gnubin:/usr/local/bin:/usr/local/bin:/Library/Frameworks/Python.framework/Versions/3.5/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Library/TeX/texbin > SAGE_ORIG_PATH_SET=True > SAGE_ROOT=/Users/forets/sage-src/sage > SAGE_SHARE=/Users/forets/sage-src/sage/local/share > SAGE_SPKG_INST=/Users/forets/sage-src/sage/local/var/lib/sage/installed > SAGE_SRC=/Users/forets/sage-src/sage/src > SAGE_VERSION=8.2.beta6 > SHELL=/bin/bash > SHLVL=4 > SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.XbkLnbFxaK/Listeners > TERM=xterm-256color > TERM_PROGRAM=Apple_Terminal > TERM_PROGRAM_VERSION=361.1 > TERM_SESSION_ID=50346A6E-89DE-4F83-8F59-4FB8BCB22954 > TMPDIR=/var/folders/b_/qy7kpq613ld0g06jy9g16hz00000gp/T/ > USER=forets > XPC_FLAGS=0x0 > XPC_SERVICE_NAME=0 > _=/usr/local/opt/coreutils/libexec/gnubin/env > __CF_USER_TEXT_ENCODING=0x1F6:0x0:0x0 > *********************************************** > make base > sage-logger -p 'sage-spkg pkgconf-0.9.7.p0' > '/Users/forets/sage-src/sage/logs/pkgs/pkgconf-0.9.7.p0.log' > [pkgconf-0.9.7.p0] dyld: Library not loaded: > /usr/local/opt/mpfr/lib/libmpfr.4.dylib > [pkgconf-0.9.7.p0] Referenced from: /usr/local/bin/awk > [pkgconf-0.9.7.p0] Reason: image not found > [pkgconf-0.9.7.p0] /Users/forets/sage-src/sage/src/bin/sage-env: line 339: > [: -ge: unary operator expected > [pkgconf-0.9.7.p0] Found local metadata for pkgconf-0.9.7.p0 > [pkgconf-0.9.7.p0] Using cached file > /Users/forets/sage-src/sage/upstream/pkgconf-0.9.7.tar.gz > [pkgconf-0.9.7.p0] pkgconf-0.9.7.p0 > [pkgconf-0.9.7.p0] ==================================================== > [pkgconf-0.9.7.p0] Setting up build directory for pkgconf-0.9.7.p0 > [pkgconf-0.9.7.p0] Finished extraction > [pkgconf-0.9.7.p0] No patch files found in ../patches > [pkgconf-0.9.7.p0] **************************************************** > [pkgconf-0.9.7.p0] Host system: > [pkgconf-0.9.7.p0] Darwin Verimags-MacBook-Pro.local 15.6.0 Darwin Kernel > Version 15.6.0: Wed Nov 2 20:30:56 PDT 2016; > root:xnu-3248.60.11.1.2~2/RELEASE_X86_64 x86_64 i386 MacBookPro11,4 Darwin > [pkgconf-0.9.7.p0] **************************************************** > [pkgconf-0.9.7.p0] C compiler: gcc > [pkgconf-0.9.7.p0] C compiler version: > [pkgconf-0.9.7.p0] Using built-in specs. > [pkgconf-0.9.7.p0] COLLECT_GCC=gcc > [pkgconf-0.9.7.p0] > COLLECT_LTO_WRAPPER=/Users/forets/sage-src/sage/local/libexec/gcc/x86_64-apple-darwin15.6.0/5.4.0/lto-wrapper > [pkgconf-0.9.7.p0] Target: x86_64-apple-darwin15.6.0 > [pkgconf-0.9.7.p0] Configured with: ../src/configure > --prefix=/Users/forets/sage-src/sage/local > --with-local-prefix=/Users/forets/sage-src/sage/local > --with-gmp=/Users/forets/sage-src/sage/local > --with-mpfr=/Users/forets/sage-src/sage/local > --with-mpc=/Users/forets/sage-src/sage/local --with-system-zlib > --disable-multilib --disable-nls --enable-languages=c,c++,fortran > --disable-libitm --with-build-config=bootstrap-debug --without-isl > --without-cloog > [pkgconf-0.9.7.p0] Thread model: posix > [pkgconf-0.9.7.p0] gcc version 5.4.0 (GCC) > [pkgconf-0.9.7.p0] **************************************************** > [pkgconf-0.9.7.p0] Configuring pkgconf-0.9.7.p0 > [pkgconf-0.9.7.p0] checking for gcc... gcc > [pkgconf-0.9.7.p0] checking whether the C compiler works... no > [pkgconf-0.9.7.p0] configure: error: in > `/Users/forets/sage-src/sage/local/var/tmp/sage/build/pkgconf-0.9.7.p0/src': > [pkgconf-0.9.7.p0] configure: error: C compiler cannot create executables > [pkgconf-0.9.7.p0] See `config.log' for more details > [pkgconf-0.9.7.p0] > ******************************************************************************** > [pkgconf-0.9.7.p0] Error configuring pkgconf-0.9.7.p0 > [pkgconf-0.9.7.p0] > ******************************************************************************** > [pkgconf-0.9.7.p0] > [pkgconf-0.9.7.p0] real 0m0.298s > [pkgconf-0.9.7.p0] user 0m0.123s > [pkgconf-0.9.7.p0] sys 0m0.144s > [pkgconf-0.9.7.p0] > ************************************************************************ > [pkgconf-0.9.7.p0] Error installing package pkgconf-0.9.7.p0 > [pkgconf-0.9.7.p0] > ************************************************************************ > [pkgconf-0.9.7.p0] Please email sage-devel ( > http://groups.google.com/group/sage-devel) > [pkgconf-0.9.7.p0] explaining the problem and including the log file > [pkgconf-0.9.7.p0] > /Users/forets/sage-src/sage/logs/pkgs/pkgconf-0.9.7.p0.log > [pkgconf-0.9.7.p0] Describe your computer, operating system, etc. > [pkgconf-0.9.7.p0] If you want to try to fix the problem yourself, *don't* > just cd to > [pkgconf-0.9.7.p0] > /Users/forets/sage-src/sage/local/var/tmp/sage/build/pkgconf-0.9.7.p0 and > type 'make' or whatever is appropriate. > [pkgconf-0.9.7.p0] Instead, the following commands setup all environment > variables > [pkgconf-0.9.7.p0] correctly and load a subshell for you to debug the > error: > [pkgconf-0.9.7.p0] (cd > '/Users/forets/sage-src/sage/local/var/tmp/sage/build/pkgconf-0.9.7.p0' && > '/Users/forets/sage-src/sage/sage' --sh) > [pkgconf-0.9.7.p0] When you are done debugging, you can type "exit" to > leave the subshell. > [pkgconf-0.9.7.p0] > ************************************************************************ > make[2]: *** > [/Users/forets/sage-src/sage/local/var/lib/sage/installed/pkgconf-0.9.7.p0] > Error 1 > make[1]: *** [all-toolchain] Error 2 > > real 0m0.749s > user 0m0.337s > sys 0m0.347s > *************************************************************** > Error building Sage. > > The following package(s) may have failed to build (not necessarily > during this run of 'make all'): > > * package: mpir-2.7.2 > log file: /Users/forets/sage-src/sage/logs/pkgs/mpir-2.7.2.log > build directory: > /Users/forets/sage-src/sage/local/var/tmp/sage/build/mpir-2.7.2 > > * package: pkgconf-0.9.7.p0 > log file: /Users/forets/sage-src/sage/logs/pkgs/pkgconf-0.9.7.p0.log > build directory: > /Users/forets/sage-src/sage/local/var/tmp/sage/build/pkgconf-0.9.7.p0 > > * documentation: dochtml > log file: /Users/forets/sage-src/sage/logs/pkgs/../dochtml.log > > The build directory may contain configuration files and other potentially > helpful information. WARNING: if you now run 'make' again, the build > directory will, by default, be deleted. Set the environment variable > SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. > > make: *** [all] Error 1 > -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To post to this group, send email to sage-support@googlegroups.com. Visit this group at https://groups.google.com/group/sage-support. For more options, visit https://groups.google.com/d/optout.
