Dear Samtools,

I am a freshmen in C, and I want to access the read bases (e.g. 
,.$.....,,.,.,...,,,.,..^+. ) and base qualities (e.g. 
<<<+;<<<<<<<<<<<=<;<;7<&) by samtools api . Can you please tell me which 
function is used to generate such two information? Thanks a lot.


An example,
"seq1 272 T 24  ,.$.....,,.,.,...,,,.,..^+. <<<+;<<<<<<<<<<<=<;<;7<&"


Best,

Xiaobin
[email protected]





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