On Wed, Jul 2, 2014 at 4:21 AM, James Kerwin <[email protected]> wrote: > Hello all, > > I'm incredibly new to all of this mapping carry-on so please don't shout... > > I currently have a project for uni where we get a web-server, install a > mapper, make a website and display the results. One requirement is that we > accept Illumina and PacBio data. I decided to use bwa for both. > > My problem is that when using samtools to convert from bam to sam I start to > get problems but only with the PacBio bam file created. The Illumina seems > fine. Does anybody know what I'm doing wrong or not understanding? > > If anybody has experienced this before could you please let me know if it's > bwa, samtools or some other thing? There seems to be relatively little info > on PacBio data "out there". > > Thanks, > James.
What do you mean by "problems"? Is there an error message? Peter ------------------------------------------------------------------------------ Open source business process management suite built on Java and Eclipse Turn processes into business applications with Bonita BPM Community Edition Quickly connect people, data, and systems into organized workflows Winner of BOSSIE, CODIE, OW2 and Gartner awards http://p.sf.net/sfu/Bonitasoft _______________________________________________ Samtools-help mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/samtools-help
