Hi, I would like to have a single graph that for example shows the read depth for all chromosomes . However, bcftools stats only allows you to give it 2 input files at a time. Is there a means to get bcfstats output for 23 chromosomes and plot it on the same graph using plot-vcfstats? I have tried this, but I can't see an option to treat the files as individual datasets, rather than merging them all into one.
I can run bcftools-stats on 2 files and then plot the output on the same graph in plot-vcfstats. However, I can't work out how to scale this up to 3 or more files. -James Blackshaw
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