Hello,
I am having trouble compiling SamTools 1.2 on a Windows 8 machine. I am new to
SamTools and C compiling. I am using MinGW-w64 for compiling the program.
Every time the compiler stops:
>mingw32-make
gcc -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1
-I. -Ihtslib-1.2.1 -c -o bam_index.o bam_index.c
gcc -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1
-I. -Ihtslib-1.2.1 -c -o bam_plcmd.o bam_plcmd.c
gcc -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1
-I. -Ihtslib-1.2.1 -c -o sam_view.o sam_view.c
gcc -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1
-I. -Ihtslib-1.2.1 -c -o bam_cat.o bam_cat.c
gcc -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1
-I. -Ihtslib-1.2.1 -c -o bam_md.o bam_md.c
gcc -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1
-I. -Ihtslib-1.2.1 -c -o bam_reheader.o bam_reheader.c
bam_reheader.c: In function 'bam_reheader':
bam_reheader.c:36:19: warning: variable 'old' set but not used
[-Wunused-but-set-variable]
bam_header_t *old;
^
gcc -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1
-I. -Ihtslib-1.2.1 -c -o bam_sort.o bam_sort.c
bam_sort.c:32:19: fatal error: regex.h: No such file or directory
compilation terminated.
makefile:116: recipe for target 'bam_sort.o' failed
mingw32-make: *** [bam_sort.o] Error 1
I also tried Visual Studio and installing pcre.
Sincerely,
Chris Wozniak
Post doc
University of Utah
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