I'm a total n00b when it comes to Samtools so forgive me for the n00b
questions. I have received several (10 or so) .var.flt.vcf files from a
collaborator and would like to convert them to something resembling a sequence
alignment, where each file simply gives me a "sequence" comprised of the
measured SNPs for that individual. I'm not concerned with retaining
metadata/positional information, since I can always recover that from the
original file - I just want to be able to compare all of these in a single
view. Any suggestions on the easiest way of doing this? Thanks in advance!
- Wolfgang --?
------------------------------------------------------------------------------
Developer Access Program for Intel Xeon Phi Processors
Access to Intel Xeon Phi processor-based developer platforms.
With one year of Intel Parallel Studio XE.
Training and support from Colfax.
Order your platform today. http://sdm.link/xeonphi
_______________________________________________
Samtools-help mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/samtools-help
