Hi, this is not really the right forum for this question, you should
probably ask on broader forums such as biostar or SeqAnswers. You of
course realize you can't recover the read sequences that led to the variant
calls.
On Mon, Nov 7, 2016 at 6:27 AM, Rumpf, Wolfgang <
[email protected]> wrote:
> I’m a total n00b when it comes to Samtools so forgive me for the n00b
> questions. I have received several (10 or so) .var.flt.vcf files from a
> collaborator and would like to convert them to something resembling a
> sequence alignment, where each file simply gives me a “sequence” comprised
> of the measured SNPs for that individual. I’m not concerned with retaining
> metadata/positional information, since I can always recover that from the
> original file - I just want to be able to compare all of these in a single
> view. Any suggestions on the easiest way of doing this? Thanks in advance!
>
> — Wolfgang --
>
>
>
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