Hi, A student recently asked me about (medical) image registration in Python. I had to tell him that there is currently hardly anything like that in Python.
I was frustrated enough about this that I decided to turn a piece of code from my PhD work into a usable library. It’s a thin wrapper around the awesome Elastix image registration toolkit. I figure/hope that because its so thin, it won’t need much maintenance, and/or is easy to maintain by others. The code and docs are on Github: https://github.com/almarklein/pyelastix Further, the package is on conda-forge and Pypi. Aside from this announcement, I’d like to propose to put together a list of Python packages that do (nonrigid) image registration. Since efforts in Python-based image registration have only resulted in relatively small and unknown packages, it would be good to have an overview. What would be a good place for this? Maybe a wiki-page on scikit-image’s Gitub repo? Two entries I would add: - Kasper Marstal’s SimpleElastix: https://github.com/kaspermarstal/SimpleElastix (also based on Elastix, but compiled against it instead of wrapping the CLI). It’s hard to compile, but Kasper is currently working on putting it on conda-forge. - During my PhD I developed PIRT (https://bitbucket.org/almarklein/pirt), which uses Cython. It’s a bit idiosyncratic, so it will need work to make “generally useful”. I don’t have the time to do this, let alone maintain it when people start using it. Regards, Almar -- You received this message because you are subscribed to the Google Groups "scikit-image" group. To unsubscribe from this group and stop receiving emails from it, send an email to scikit-image+unsubscr...@googlegroups.com. To post to this group, send an email to scikit-image@googlegroups.com. To view this discussion on the web, visit https://groups.google.com/d/msgid/scikit-image/57f6098a.8926c20a.61cd.b174%40mx.google.com. For more options, visit https://groups.google.com/d/optout.
