Re: [ccp4bb] Ubuntu and Coot

2024-05-08 Thread Tom Peat 
And yet another quick update- I rebooted the machine again and now the ccp4 
version of Coot is working, but the standalone version is not (and the Phenix 
version continues to work). Just thought I would throw this out there for 
others...
cheers, tom

From: CCP4 bulletin board  on behalf of Tom Peat 
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Sent: Thursday, May 9, 2024 9:29 AM
To: CCP4BB@JISCMAIL.AC.UK 
Subject: Re: [ccp4bb] Ubuntu and Coot

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Just an update- I tested using Coot through the Phenix package and that seems 
to work (version 1.21-5207-000 and version 0.9.8.93 of Coot). Maybe a version 
issue? Or Phenix just comes with libraries that ccp4 doesn't? Not sure yet.
cheers, tom

From: CCP4 bulletin board  on behalf of Martin Malý 

Sent: Wednesday, May 8, 2024 5:31 PM
To: CCP4BB@JISCMAIL.AC.UK 
Subject: Re: [ccp4bb] Ubuntu and Coot

Dear Tom,
I am using basically the same setup (Linux Mint 21.3 Xfce based on Ubuntu 
22.04, CCP4 8.0.019 including Coot 0.9.8.93). Everything works well on my 
computer. I did not have any issues with Coot even in CCP4 8.0.017. I am sorry 
I don't know the reason of the error...
Cheers,
Martin

On 08/05/2024 06:59, Tom Peat wrote:
Hello All,

I'm not sure if this is specific to me or whether I missed the fix, but I'm 
currently running Ubuntu 22.04.1 and updated to the latest ccp4 version 8.0.019 
and Coot crashes. I tested to see whether it was just the ccp4 version by 
downloading coot separately into my bin directory 
(coot-Linux-x86_64-ubuntu-20.04.3-pre-release-gtk2-python as this was the 
latest version I could find) and that gave the same outcome: core: #f
No core file found. No debugging

Coot crashed in the previous version of ccp4 8.0.017, which is one reason I 
upgraded to 8.0.019. I'm not sure if there was an update to Ubuntu that may 
have started this whole debacle, but everything seemed to work last month...

Has anyone else encountered this? Was there a fix? I googled several times and 
got some potential issues with libraries (libssl, etc), but none of these 
potential fixes helped.
cheers, tom



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Re: [ccp4bb] Ubuntu and Coot

2024-05-08 Thread Tom Peat 
Just an update- I tested using Coot through the Phenix package and that seems 
to work (version 1.21-5207-000 and version 0.9.8.93 of Coot). Maybe a version 
issue? Or Phenix just comes with libraries that ccp4 doesn't? Not sure yet.
cheers, tom

From: CCP4 bulletin board  on behalf of Martin Malý 

Sent: Wednesday, May 8, 2024 5:31 PM
To: CCP4BB@JISCMAIL.AC.UK 
Subject: Re: [ccp4bb] Ubuntu and Coot

Dear Tom,
I am using basically the same setup (Linux Mint 21.3 Xfce based on Ubuntu 
22.04, CCP4 8.0.019 including Coot 0.9.8.93). Everything works well on my 
computer. I did not have any issues with Coot even in CCP4 8.0.017. I am sorry 
I don't know the reason of the error...
Cheers,
Martin

On 08/05/2024 06:59, Tom Peat wrote:
Hello All,

I'm not sure if this is specific to me or whether I missed the fix, but I'm 
currently running Ubuntu 22.04.1 and updated to the latest ccp4 version 8.0.019 
and Coot crashes. I tested to see whether it was just the ccp4 version by 
downloading coot separately into my bin directory 
(coot-Linux-x86_64-ubuntu-20.04.3-pre-release-gtk2-python as this was the 
latest version I could find) and that gave the same outcome: core: #f
No core file found. No debugging

Coot crashed in the previous version of ccp4 8.0.017, which is one reason I 
upgraded to 8.0.019. I'm not sure if there was an update to Ubuntu that may 
have started this whole debacle, but everything seemed to work last month...

Has anyone else encountered this? Was there a fix? I googled several times and 
got some potential issues with libraries (libssl, etc), but none of these 
potential fixes helped.
cheers, tom



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Re: [ccp4bb] Ubuntu and Coot

2024-05-08 Thread Martin Malý 

Dear Tom,
I am using basically the same setup (Linux Mint 21.3 Xfce based on 
Ubuntu 22.04, CCP4 8.0.019 including Coot 0.9.8.93). Everything works 
well on my computer. I did not have any issues with Coot even in CCP4 
8.0.017. I am sorry I don't know the reason of the error...

Cheers,
Martin

On 08/05/2024 06:59, Tom Peat wrote:

Hello All,

I'm not sure if this is specific to me or whether I missed the fix, 
but I'm currently running Ubuntu 22.04.1 and updated to the latest 
ccp4 version 8.0.019 and Coot crashes. I tested to see whether it was 
just the ccp4 version by downloading coot separately into my bin 
directory (coot-Linux-x86_64-ubuntu-20.04.3-pre-release-gtk2-python as 
this was the latest version I could find) and that gave the same 
outcome: core: #f

No core file found. No debugging

Coot crashed in the previous version of ccp4 8.0.017, which is one 
reason I upgraded to 8.0.019. I'm not sure if there was an update to 
Ubuntu that may have started this whole debacle, but everything seemed 
to work last month...


Has anyone else encountered this? Was there a fix? I googled several 
times and got some potential issues with libraries (libssl, etc), but 
none of these potential fixes helped.

cheers, tom



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[ccp4bb] Ubuntu and Coot

2024-05-07 Thread Tom Peat 
Hello All,

I'm not sure if this is specific to me or whether I missed the fix, but I'm 
currently running Ubuntu 22.04.1 and updated to the latest ccp4 version 8.0.019 
and Coot crashes. I tested to see whether it was just the ccp4 version by 
downloading coot separately into my bin directory 
(coot-Linux-x86_64-ubuntu-20.04.3-pre-release-gtk2-python as this was the 
latest version I could find) and that gave the same outcome: core: #f
No core file found. No debugging

Coot crashed in the previous version of ccp4 8.0.017, which is one reason I 
upgraded to 8.0.019. I'm not sure if there was an update to Ubuntu that may 
have started this whole debacle, but everything seemed to work last month...

Has anyone else encountered this? Was there a fix? I googled several times and 
got some potential issues with libraries (libssl, etc), but none of these 
potential fixes helped.
cheers, tom



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