[Freesurfer] mri_convert: the meaning of the arguments -iid, -ijd, -ikd, -iis, -ijs, and -iks?
Dear Freesurfer experts, Could someone please let me know what is the meaning of the arguments -iid, -ijd, -ikd, -iis, -ijs, and -iks of mri_covert? >From the internet and by typing mri_convert on the command line I only managed to find the following information: -iis, --in_i_size -ijs, --in_j_size -iks, --in_k_size -iid, --in_i_direction -ijd, --in_j_direction -ikd, --in_k_direction However, I don't still understand what is the effect of those argumnents in the following command: mri_convert gre_000.bfloat data.mgh -iid 1 0 0 -ijd 0 -1 0 -ikd 0 0 1 -iis 5 -ijs 5 -iks 5 Are the arguments describing the direction and voxelsize of .bfloat? Best, Maria ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] mri_convert: the meaning of the arguments -iid, -ijd, -ikd, -iis, -ijs, and -iks?
-i{ijk}s will change the voxel size of the columns, rows, and slices, respectively -i{ijk}d will change the direction cosines of the cols, rows, slices On 4/25/17 11:47 AM, Maria Hakonen wrote: Dear Freesurfer experts, Could someone please let me know what is the meaning of the arguments -iid, -ijd, -ikd, -iis, -ijs, and -iks of mri_covert? From the internet and by typing mri_convert on the command line I only managed to find the following information: -iis, --in_i_size -ijs, --in_j_size -iks, --in_k_size -iid, --in_i_direction -ijd, --in_j_direction -ikd, --in_k_direction However, I don't still understand what is the effect of those argumnents in the following command: mri_convert gre_000.bfloat data.mgh -iid 1 0 0 -ijd 0 -1 0 -ikd 0 0 1 -iis 5 -ijs 5 -iks 5 Are the arguments describing the direction and voxelsize of .bfloat? Best, Maria ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] mri_convert: the meaning of the arguments -iid, -ijd, -ikd, -iis, -ijs, and -iks?
Many thanks for the answer! Best, Maria 2017-04-25 21:05 GMT+03:00 Douglas Greve : > -i{ijk}s will change the voxel size of the columns, rows, and slices, > respectively > > -i{ijk}d will change the direction cosines of the cols, rows, slices > > > > On 4/25/17 11:47 AM, Maria Hakonen wrote: > > Dear Freesurfer experts, > > Could someone please let me know what is the meaning of the arguments > -iid, -ijd, -ikd, -iis, -ijs, and -iks of mri_covert? > From the internet and by typing mri_convert on the command line I only > managed to find the following information: > > -iis, --in_i_size > -ijs, --in_j_size > -iks, --in_k_size > -iid, --in_i_direction > -ijd, --in_j_direction > -ikd, --in_k_direction > > However, I don't still understand what is the effect of those argumnents > in the following command: > > mri_convert gre_000.bfloat data.mgh -iid 1 0 0 -ijd 0 -1 0 -ikd 0 0 1 -iis > 5 -ijs 5 -iks 5 > > Are the arguments describing the direction and voxelsize of .bfloat? > > Best, > Maria > > > ___ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.