Many thanks for the answer!
Best,
Maria
2017-04-25 21:05 GMT+03:00 Douglas Greve <gr...@nmr.mgh.harvard.edu>:
> -i{ijk}s will change the voxel size of the columns, rows, and slices,
> respectively
>
> -i{ijk}d will change the direction cosines of the cols, rows, slices
>
>
>
> On 4/25/17 11:47 AM, Maria Hakonen wrote:
>
> Dear Freesurfer experts,
>
> Could someone please let me know what is the meaning of the arguments
> -iid, -ijd, -ikd, -iis, -ijs, and -iks of mri_covert?
> From the internet and by typing mri_convert on the command line I only
> managed to find the following information:
>
> -iis, --in_i_size <size>
> -ijs, --in_j_size <size>
> -iks, --in_k_size <size>
> -iid, --in_i_direction <R direction> <A direction> <S direction>
> -ijd, --in_j_direction <R direction> <A direction> <S direction>
> -ikd, --in_k_direction <R direction> <A direction> <S direction>
>
> However, I don't still understand what is the effect of those argumnents
> in the following command:
>
> mri_convert gre_000.bfloat data.mgh -iid 1 0 0 -ijd 0 -1 0 -ikd 0 0 1 -iis
> 5 -ijs 5 -iks 5
>
> Are the arguments describing the direction and voxelsize of .bfloat?
>
> Best,
> Maria
>
>
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